Problems in Homebrew tap Brewsci/bio

23 problem(s) on this page

Project Package name Maintainer Problem
bracken bracken- Homepage link https://ccb.jhu.edu/software/bracken/index.shtml is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
cluster-picker cluster-picker- Homepage link http://hiv.bio.ed.ac.uk/software.html is a permanent redirect to its HTTPS counterpart https://hiv.bio.ed.ac.uk/software.html and should be updated.
dida dida- Homepage link https://www.bcgsc.ca/platform/bioinfo/software/dida is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
discovardenovo discovardenovo- Homepage link https://www.broadinstitute.org/software/discovar/blog/ is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
fasta fasta- Homepage link https://faculty.virginia.edu/wrpearson/fasta/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
flash-seq flash- Homepage link https://ccb.jhu.edu/software/FLASH/ is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
fwdpp fwdpp- Homepage link https://molpopgen.github.io/fwdpp/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
gatk gatk- Homepage link https://software.broadinstitute.org/gatk is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
gblocks gblocks- Homepage link http://molevol.cmima.csic.es/castresana/Gblocks.html is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
gepard gepard- Homepage link http://cube.univie.ac.at/gepard is a permanent redirect to its HTTPS counterpart https://cube.univie.ac.at/gepard and should be updated.
jellyfish-k-mer jellyfish- Homepage link http://www.genome.umd.edu/jellyfish.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
kaiju kaiju- Homepage link http://kaiju.binf.ku.dk/ is a permanent redirect to its HTTPS counterpart https://kaiju.binf.ku.dk/ and should be updated.
kmc kmc- Homepage link http://sun.aei.polsl.pl/kmc/ is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
kraken kraken- Homepage link https://ccb.jhu.edu/software/kraken/ is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
last last- Homepage link http://last.cbrc.jp/ is dead (SSL error: certificate issued for different hostname) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
mp-est mp-est- Homepage link https://faculty.franklin.uga.edu/lliu/content/mp-est is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
newick-utils newick-utils- Homepage link http://cegg.unige.ch/newick_utils is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
quip quip- Homepage link https://homes.cs.washington.edu/~dcjones/quip is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
r8s r8s- Homepage link http://ceiba.biosci.arizona.edu/r8s/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
realphy realphy- Homepage link https://realphy.unibas.ch/fcgi/realphy is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
stringtie stringtie- Homepage link https://ccb.jhu.edu/software/stringtie/ is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
swipe swipe- Homepage link http://dna.uio.no/swipe/ is dead (DNS error: domain name not found) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
velvet velvet- Homepage link https://www.ebi.ac.uk/~zerbino/velvet/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).