Problems in Gentoo Science overlay

150 problem(s) on this page

Project Package name Maintainer Problem
aocl-libm sci-libs/aocl-libmsci@gentoo.org Homepage link https://developer.amd.com/amd-aocl/amd-math-library-libm/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
aocl-sparse sci-libs/aocl-sparsegentoo@aisha.cc Homepage link https://developer.amd.com/amd-aocl/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
aocl-sparse sci-libs/aocl-sparsegentoo@aisha.cc Homepage link https://developer.amd.com/amd-aocl/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
aocl-sparse sci-libs/aocl-sparsesci@gentoo.org Homepage link https://developer.amd.com/amd-aocl/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
aocl-sparse sci-libs/aocl-sparsesci@gentoo.org Homepage link https://developer.amd.com/amd-aocl/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
chimera sci-chemistry/chimerapacho@gentoo.org Homepage link https://www.cgl.ucsf.edu/chimera/ is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
chimera sci-chemistry/chimerasci-chemistry@gentoo.org Homepage link https://www.cgl.ucsf.edu/chimera/ is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
clview sci-biology/clviewmmokrejs@fold.natur.cuni.cz Homepage link https://sourceforge.net/projects/clview needs a trailing slash added, otherwise there's a javascript redirect.
clview sci-biology/clviewsci-biology@gentoo.org Homepage link https://sourceforge.net/projects/clview needs a trailing slash added, otherwise there's a javascript redirect.
dl-poly sci-chemistry/dl_polyottxor@gentoo.org Homepage link http://www.ccp5.ac.uk/DL_POLY_CLASSIC/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
dl-poly sci-chemistry/dl_polyottxor@gentoo.org Homepage link http://www.ccp5.ac.uk/DL_POLY_CLASSIC/ is a permanent redirect to its HTTPS counterpart https://www.ccp5.ac.uk/DL_POLY_CLASSIC/ and should be updated.
dl-poly sci-chemistry/dl_polyottxor@gentoo.org Homepage link http://www.ccp5.ac.uk/DL_POLY/ is a permanent redirect to its HTTPS counterpart https://www.ccp5.ac.uk/DL_POLY/ and should be updated.
dl-poly sci-chemistry/dl_polysci-chemistry@gentoo.org Homepage link http://www.ccp5.ac.uk/DL_POLY_CLASSIC/ is a permanent redirect to its HTTPS counterpart https://www.ccp5.ac.uk/DL_POLY_CLASSIC/ and should be updated.
dl-poly sci-chemistry/dl_polysci-chemistry@gentoo.org Homepage link http://www.ccp5.ac.uk/DL_POLY/ is a permanent redirect to its HTTPS counterpart https://www.ccp5.ac.uk/DL_POLY/ and should be updated.
dl-poly sci-chemistry/dl_polysci-chemistry@gentoo.org Homepage link http://www.ccp5.ac.uk/DL_POLY_CLASSIC/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
dpc++ sys-devel/DPC++sci@gentoo.org Download link https://github.com/intel/cm-cpu-emulation/archive/refs/tags/v2022-08-22.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
dpc++ sys-devel/DPC++sci@gentoo.org Download link https://github.com/intel/cm-cpu-emulation/archive/refs/tags/v2022-08-22.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
dpc++ sys-devel/DPC++sci@gentoo.org Download link https://github.com/intel/cm-cpu-emulation/archive/refs/tags/v2022-08-22.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
drlfom-bidsdata sci-biology/drlfom_bidsdatagentoo@chymera.eu Homepage link http://chymera.eu/docs/focus/open-science/ is a permanent redirect to its HTTPS counterpart https://chymera.eu/docs/focus/open-science/ and should be updated.
drlfom-bidsdata sci-biology/drlfom_bidsdatasci@gentoo.org Homepage link http://chymera.eu/docs/focus/open-science/ is a permanent redirect to its HTTPS counterpart https://chymera.eu/docs/focus/open-science/ and should be updated.
elmerfem sci-misc/elmer-femsci@gentoo.org Homepage link https://sourceforge.net/projects/svn/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
environment-modules sys-cluster/modulesbtbn@btbn.de Homepage link http://modules.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://modules.sourceforge.net/ and should be updated.
environment-modules sys-cluster/modulessci@gentoo.org Homepage link http://modules.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://modules.sourceforge.net/ and should be updated.
envytools x11-misc/envytoolsalexxy@gentoo.org Homepage link https://github.com/pathscale/envytools is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
envytools x11-misc/envytoolsalexxy@gentoo.org Homepage link https://github.com/pathscale/envytools is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
envytools x11-misc/envytoolssci@gentoo.org Homepage link https://github.com/pathscale/envytools is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
envytools x11-misc/envytoolssci@gentoo.org Homepage link https://github.com/pathscale/envytools is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
fdlibm sci-libs/fdlibmsci@gentoo.org Homepage link https://www.netlib.org/fdlibm is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
fgsl sci-libs/fgslsci@gentoo.org Download link https://doku.lrz.de/download/attachments/43321199/fgsl-1.3.0.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
fgsl sci-libs/fgslxarthisius@gentoo.org Download link https://doku.lrz.de/download/attachments/43321199/fgsl-1.3.0.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
fits-astronomical-image-format dev-java/fitssci@gentoo.org Homepage link http://fits.gsfc.nasa.gov/fits_libraries.html is a permanent redirect to its HTTPS counterpart https://fits.gsfc.nasa.gov/fits_libraries.html and should be updated.
fits-astronomical-image-format dev-java/fitssci@gentoo.org Download link http://heasarc.gsfc.nasa.gov/docs/heasarc/fits/java/v1.0/v1.15.1/fits.jar is a permanent redirect to its HTTPS counterpart https://heasarc.gsfc.nasa.gov/docs/heasarc/fits/java/v1.0/v1.15.1/fits.jar and should be updated.
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Homepage link https://homepages.see.leeds.ac.uk/~earawa/FoX// is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2-dom.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2-full.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2-sax.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2-wcml.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2-wkml.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2-wxml.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
fox-fortran-xml-library sci-libs/foxsci@gentoo.org Download link http://www1.gly.bris.ac.uk/~walker/FoX/source/FoX-4.1.2.tar.gz is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints).
gdcm sci-libs/gdcmfx.carton91@gmail.com Homepage link http://gdcm.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://gdcm.sourceforge.net/ and should be updated.
germline sci-biology/germlinemmokrejs@fold.natur.cuni.cz Homepage link http://genome.cshlp.org/content/19/2/318.full is a permanent redirect to its HTTPS counterpart https://genome.cshlp.org/content/19/2/318.full and should be updated.
germline sci-biology/germlinesci-biology@gentoo.org Homepage link http://genome.cshlp.org/content/19/2/318.full is a permanent redirect to its HTTPS counterpart https://genome.cshlp.org/content/19/2/318.full and should be updated.
irsabi-bidsdata sci-biology/irsabi_bidsdatagentoo@chymera.eu Homepage link http://chymera.eu/docs/focus/open-science/ is a permanent redirect to its HTTPS counterpart https://chymera.eu/docs/focus/open-science/ and should be updated.
irsabi-bidsdata sci-biology/irsabi_bidsdatasci@gentoo.org Homepage link http://chymera.eu/docs/focus/open-science/ is a permanent redirect to its HTTPS counterpart https://chymera.eu/docs/focus/open-science/ and should be updated.
irstlm sci-misc/irstlmpavel.a.denisov@gmail.com Homepage link https://hlt-mt.fbk.eu/technologies/irstlm is dead (DNS error: domain name not found) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
irstlm sci-misc/irstlmpavel.a.denisov@gmail.com Homepage link https://hlt-mt.fbk.eu/technologies/irstlm is dead (DNS error: domain name not found) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
jellyfish-k-mer sci-biology/jellyfishmmokrejs@fold.natur.cuni.cz Homepage link https://genome.umd.edu/jellyfish.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
jellyfish-k-mer sci-biology/jellyfishmmokrejs@fold.natur.cuni.cz Homepage link https://genome.umd.edu/jellyfish.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
jellyfish-k-mer sci-biology/jellyfishsci-biology@gentoo.org Homepage link https://genome.umd.edu/jellyfish.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
jellyfish-k-mer sci-biology/jellyfishsci-biology@gentoo.org Homepage link https://genome.umd.edu/jellyfish.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
libflame-amd sci-libs/libflame-amdgentoo@aisha.cc Homepage link https://developer.amd.com/amd-aocl/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
libflame-amd sci-libs/libflame-amdsci@gentoo.org Homepage link https://developer.amd.com/amd-aocl/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
libsufr sci-libs/libsufrgit@vandersluys.nl Homepage link http://libsufr.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://libsufr.sourceforge.net/ and should be updated.
libsufr sci-libs/libsufrsci@gentoo.org Homepage link http://libsufr.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://libsufr.sourceforge.net/ and should be updated.
libthesky sci-astronomy/libtheskygit@vandersluys.nl Homepage link http://libthesky.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://libthesky.sourceforge.net/ and should be updated.
libthesky sci-astronomy/libtheskysci-astronomy@gentoo.org Homepage link http://libthesky.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://libthesky.sourceforge.net/ and should be updated.
masurca sci-biology/MaSuRCAmmokrejs@fold.natur.cuni.cz Homepage link http://www.genome.umd.edu/masurca.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
masurca sci-biology/MaSuRCAmmokrejs@fold.natur.cuni.cz Homepage link http://www.genome.umd.edu/masurca.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
masurca sci-biology/MaSuRCAsci-biology@gentoo.org Homepage link http://www.genome.umd.edu/masurca.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
masurca sci-biology/MaSuRCAsci-biology@gentoo.org Homepage link http://www.genome.umd.edu/masurca.html is dead (SSL error: incomplete certificate chain) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
mesquite sci-libs/mesquitesci@gentoo.org Download link https://software.sandia.gov/mesquite/mesquite-2.3.0.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
mics sci-chemistry/micssci-chemistry@gentoo.org Homepage link https://spin.niddk.nih.gov/bax/software/MICS/ is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
mip-scaffolder sci-biology/mip-scaffoldermmokrejs@fold.natur.cuni.cz Download link http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/mip-scaffolder-0.6.tar.gz is a permanent redirect to its HTTPS counterpart https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/mip-scaffolder-0.6.tar.gz and should be updated.
mip-scaffolder sci-biology/mip-scaffoldersci-biology@gentoo.org Download link http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/mip-scaffolder-0.6.tar.gz is a permanent redirect to its HTTPS counterpart https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/mip-scaffolder-0.6.tar.gz and should be updated.
mochiview sci-biology/MochiViewmmokrejs@fold.natur.cuni.cz Homepage link https://www.johnsonlab.ucsf.edu/mochi.html is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
mochiview sci-biology/MochiViewmmokrejs@fold.natur.cuni.cz Download link https://www.johnsonlab.ucsf.edu/s/MochiView_v146.zip is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints).
mochiview sci-biology/MochiViewsci-biology@gentoo.org Homepage link https://www.johnsonlab.ucsf.edu/mochi.html is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
mochiview sci-biology/MochiViewsci-biology@gentoo.org Download link https://www.johnsonlab.ucsf.edu/s/MochiView_v146.zip is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints).
motioncor2 sci-chemistry/MotionCor2alexxy@gentoo.org Homepage link https://emcore.ucsf.edu/ucsf-motioncor2 is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
motioncor2 sci-chemistry/MotionCor2sci-chemistry@gentoo.org Homepage link https://emcore.ucsf.edu/ucsf-motioncor2 is dead (DNS error: timeout while contacting DNS servers) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
mrfast sci-biology/mrfastsci-biology@gentoo.org Homepage link http://mrfast.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://mrfast.sourceforge.net/ and should be updated.
msautil sci-biology/msautilmmokrejs@fold.natur.cuni.cz Homepage link http://bioresearch.byu.edu/msa is a permanent redirect to its HTTPS counterpart https://bioresearch.byu.edu/msa and should be updated.
msautil sci-biology/msautilmmokrejs@fold.natur.cuni.cz Download link http://bioresearch.byu.edu/msa/msautil-1.1.tgz is a permanent redirect to its HTTPS counterpart https://bioresearch.byu.edu/msa/msautil-1.1.tgz and should be updated.
msautil sci-biology/msautilsci-biology@gentoo.org Homepage link http://bioresearch.byu.edu/msa is a permanent redirect to its HTTPS counterpart https://bioresearch.byu.edu/msa and should be updated.
msautil sci-biology/msautilsci-biology@gentoo.org Download link http://bioresearch.byu.edu/msa/msautil-1.1.tgz is a permanent redirect to its HTTPS counterpart https://bioresearch.byu.edu/msa/msautil-1.1.tgz and should be updated.
museqbox sci-biology/MuSeqBoxmmokrejs@fold.natur.cuni.cz Homepage link http://brendelgroup.org/bioinformatics2go/MuSeqBox.php is a permanent redirect to its HTTPS counterpart https://brendelgroup.org/bioinformatics2go/MuSeqBox.php and should be updated.
museqbox sci-biology/MuSeqBoxsci-biology@gentoo.org Homepage link http://brendelgroup.org/bioinformatics2go/MuSeqBox.php is a permanent redirect to its HTTPS counterpart https://brendelgroup.org/bioinformatics2go/MuSeqBox.php and should be updated.
ngsepcore sci-biology/NGSEPcore-binmmokrejs@fold.natur.cuni.cz Download link https://sourceforge.net/projects/ngsep/files/Library/NGSEPcore_4.0.3.jar is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
ngsepcore sci-biology/NGSEPcore-binsci-biology@gentoo.org Download link https://sourceforge.net/projects/ngsep/files/Library/NGSEPcore_4.0.3.jar is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
ocaml:lacaml dev-ml/lacamlsci@gentoo.org Homepage link https://bitbucket.org/mmottl/lacaml is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
openfst sci-misc/openfstflammie@gentoo.org Homepage link http://www.openfst.org/ is a permanent redirect to its HTTPS counterpart https://www.openfst.org/ and should be updated.
openfst sci-misc/openfstflammie@gentoo.org Download link http://www.openfst.org/twiki/pub/FST/FstDownload/openfst-1.8.2.tar.gz is a permanent redirect to its HTTPS counterpart https://www.openfst.org/twiki/pub/FST/FstDownload/openfst-1.8.2.tar.gz and should be updated.
openfst sci-misc/openfstsci@gentoo.org Homepage link http://www.openfst.org/ is a permanent redirect to its HTTPS counterpart https://www.openfst.org/ and should be updated.
openfst sci-misc/openfstsci@gentoo.org Download link http://www.openfst.org/twiki/pub/FST/FstDownload/openfst-1.8.2.tar.gz is a permanent redirect to its HTTPS counterpart https://www.openfst.org/twiki/pub/FST/FstDownload/openfst-1.8.2.tar.gz and should be updated.
opfvta-bidsdata sci-biology/opfvta_bidsdatagentoo@chymera.eu Homepage link http://chymera.eu/docs/focus/open-science/ is a permanent redirect to its HTTPS counterpart https://chymera.eu/docs/focus/open-science/ and should be updated.
opfvta-bidsdata sci-biology/opfvta_bidsdatasci@gentoo.org Homepage link http://chymera.eu/docs/focus/open-science/ is a permanent redirect to its HTTPS counterpart https://chymera.eu/docs/focus/open-science/ and should be updated.
optpp sci-libs/optppsci@gentoo.org Homepage link https://software.sandia.gov/opt++/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
optpp sci-libs/optppsci@gentoo.org Download link https://software.sandia.gov/opt++/downloads/optpp-2.4.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
pairagon sci-biology/pairagonmmokrejs@fold.natur.cuni.cz Homepage link https://mblab.wustl.edu/software.html is dead (SSL error: self signed certificate) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
pairagon sci-biology/pairagonsci-biology@gentoo.org Homepage link https://mblab.wustl.edu/software.html is dead (SSL error: self signed certificate) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
paraat sci-biology/ParaATmmokrejs@fold.natur.cuni.cz Homepage link http://cbb.big.ac.cn/software is dead (Server disconnected) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
paraat sci-biology/ParaATsci-biology@gentoo.org Homepage link http://cbb.big.ac.cn/software is dead (Server disconnected) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
perl:btlib dev-perl/BTLibsci-biology@gentoo.org Homepage link https://sourceforge.net/projects/downloads/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
perl:btlib dev-perl/BTLibsci-biology@gentoo.org Homepage link https://sourceforge.net/projects/downloads/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
perlprimer sci-biology/perlprimersci-biology@gentoo.org Homepage link http://perlprimer.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://perlprimer.sourceforge.net/ and should be updated.
pg2plplot sci-libs/pg2plplotastrofloyd@gmail.com Homepage link http://pg2plplot.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://pg2plplot.sourceforge.net/ and should be updated.
pg2plplot sci-libs/pg2plplotsci@gentoo.org Homepage link http://pg2plplot.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://pg2plplot.sourceforge.net/ and should be updated.
pileup sci-biology/pileupmmokrejs@fold.natur.cuni.cz Homepage link https://www.sanger.ac.uk/resources/software/ssaha2/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
pileup sci-biology/pileupsci-biology@gentoo.org Homepage link https://www.sanger.ac.uk/resources/software/ssaha2/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
praat sci-misc/praatflammie@gentoo.org Homepage link http://www.fon.hum.uva.nl/praat/ is a permanent redirect to its HTTPS counterpart https://www.fon.hum.uva.nl/praat/ and should be updated.
prinseq-lite sci-biology/prinseq-litemmokrejs@fold.natur.cuni.cz Homepage link http://prinseq.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://prinseq.sourceforge.net/ and should be updated.
prinseq-lite sci-biology/prinseq-litesci-biology@gentoo.org Homepage link http://prinseq.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://prinseq.sourceforge.net/ and should be updated.
python:meshpy dev-python/meshpysci@gentoo.org Download link https://github.com/inducer/meshpy/archive/v2020.1.tar.gz is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints).
python:numba-dpex dev-python/numba-dpexsci@gentoo.org Homepage link https://pypi.org/project/numba-dpex/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
python:pybigwig dev-python/pyBigWigmmokrejs@fold.natur.cuni.cz Download link https://github.com/dpryan79/pyBigWig/archive/0.3.17.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
python:pybigwig dev-python/pyBigWigmmokrejs@fold.natur.cuni.cz Download link https://github.com/dpryan79/pyBigWig/archive/0.3.18.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
python:pybigwig dev-python/pyBigWigsci-biology@gentoo.org Download link https://github.com/dpryan79/pyBigWig/archive/0.3.17.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
python:pybigwig dev-python/pyBigWigsci-biology@gentoo.org Download link https://github.com/dpryan79/pyBigWig/archive/0.3.18.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
samstat sci-biology/samstatmmokrejs@fold.natur.cuni.cz Homepage link http://samstat.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://samstat.sourceforge.net/ and should be updated.
samstat sci-biology/samstatsci-biology@gentoo.org Homepage link http://samstat.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://samstat.sourceforge.net/ and should be updated.
skewer sci-biology/skewer-binmmokrejs@fold.natur.cuni.cz Homepage link https://sourceforge.net/projects/skewer needs a trailing slash added, otherwise there's a javascript redirect.
skewer sci-biology/skewer-binsci-biology@gentoo.org Homepage link https://sourceforge.net/projects/skewer needs a trailing slash added, otherwise there's a javascript redirect.
solexaqa sci-biology/SolexaQAmmokrejs@fold.natur.cuni.cz Homepage link https://sourceforge.net/projects/solexaqa needs a trailing slash added, otherwise there's a javascript redirect.
solexaqa sci-biology/SolexaQAsci-biology@gentoo.org Homepage link https://sourceforge.net/projects/solexaqa needs a trailing slash added, otherwise there's a javascript redirect.
ssake sci-biology/SSAKEmmokrejs@fold.natur.cuni.cz Homepage link http://www.bcgsc.ca/platform/bioinfo/software/ssake is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
ssake sci-biology/SSAKEmmokrejs@fold.natur.cuni.cz Download link http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8.2/ssake_v3-8-2.tar.gz is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints).
ssake sci-biology/SSAKEsci-biology@gentoo.org Download link http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8.2/ssake_v3-8-2.tar.gz is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints).
ssake sci-biology/SSAKEsci-biology@gentoo.org Homepage link http://www.bcgsc.ca/platform/bioinfo/software/ssake is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
stacks sci-biology/stacksmmokrejs@fold.natur.cuni.cz Download link http://creskolab.uoregon.edu/stacks/source/stacks-2.60.tar.gz is a permanent redirect to its HTTPS counterpart https://creskolab.uoregon.edu/stacks/source/stacks-2.60.tar.gz and should be updated.
stacks sci-biology/stacksmmokrejs@fold.natur.cuni.cz Homepage link http://creskolab.uoregon.edu/stacks is a permanent redirect to its HTTPS counterpart https://creskolab.uoregon.edu/stacks and should be updated.
stacks sci-biology/stackssci-biology@gentoo.org Homepage link http://creskolab.uoregon.edu/stacks is a permanent redirect to its HTTPS counterpart https://creskolab.uoregon.edu/stacks and should be updated.
stacks sci-biology/stackssci-biology@gentoo.org Download link http://creskolab.uoregon.edu/stacks/source/stacks-2.60.tar.gz is a permanent redirect to its HTTPS counterpart https://creskolab.uoregon.edu/stacks/source/stacks-2.60.tar.gz and should be updated.
starparse sci-libs/starparsesci@gentoo.org Homepage link http://burrow-owl.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://burrow-owl.sourceforge.net/ and should be updated.
stringtie sci-biology/stringtiemmokrejs@fold.natur.cuni.cz Homepage link https://ccb.jhu.edu/software/stringtie is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
stringtie sci-biology/stringtiemmokrejs@fold.natur.cuni.cz Download link https://github.com/gpertea/stringtie/releases/download/v2.1.5/stringtie-2.1.5.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
stringtie sci-biology/stringtiesci-biology@gentoo.org Download link https://github.com/gpertea/stringtie/releases/download/v2.1.5/stringtie-2.1.5.tar.gz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
stringtie sci-biology/stringtiesci-biology@gentoo.org Homepage link https://ccb.jhu.edu/software/stringtie is dead (SSL error) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
subread sci-biology/subreadmmokrejs@fold.natur.cuni.cz Homepage link http://bioinf.wehi.edu.au/featureCounts/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
subread sci-biology/subreadmmokrejs@fold.natur.cuni.cz Homepage link http://bioinf.wehi.edu.au/featureCounts/ is a permanent redirect to its HTTPS counterpart https://bioinf.wehi.edu.au/featureCounts/ and should be updated.
subread sci-biology/subreadsci-biology@gentoo.org Homepage link http://bioinf.wehi.edu.au/featureCounts/ is a permanent redirect to its HTTPS counterpart https://bioinf.wehi.edu.au/featureCounts/ and should be updated.
subread sci-biology/subreadsci-biology@gentoo.org Homepage link http://bioinf.wehi.edu.au/featureCounts/ is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
swissknife sci-biology/swissknifesci-biology@gentoo.org Homepage link http://swissknife.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://swissknife.sourceforge.net/ and should be updated.
tagdust sci-biology/tagdustmmokrejs@fold.natur.cuni.cz Download link http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
tagdust sci-biology/tagdustmmokrejs@fold.natur.cuni.cz Homepage link http://genome.gsc.riken.jp/osc/english/dataresource is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
tagdust sci-biology/tagdustsci-biology@gentoo.org Download link http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
tagdust sci-biology/tagdustsci-biology@gentoo.org Homepage link http://genome.gsc.riken.jp/osc/english/dataresource is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
trf-tandem-repeats-finder sci-biology/trf-binsci-biology@gentoo.org Download link http://tandem.bu.edu/trf/downloads/trf409.linux64 is a permanent redirect to its HTTPS counterpart https://tandem.bu.edu/trf/downloads/trf409.linux64 and should be updated.
trf-tandem-repeats-finder sci-biology/trf-binsci-biology@gentoo.org Homepage link http://tandem.bu.edu/trf/trf.html is a permanent redirect to its HTTPS counterpart https://tandem.bu.edu/trf/trf.html and should be updated.
trf-tandem-repeats-finder sci-biology/trf-binsci-biology@gentoo.org Download link http://tandem.bu.edu/trf/downloads/trf409.linux32 is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
trf-tandem-repeats-finder sci-biology/trf-binsci-biology@gentoo.org Download link http://tandem.bu.edu/trf/downloads/trf409.linux64 is dead (HTTP 404) for more than a month and should be replaced by alive link (see other packages for hints).
trf-tandem-repeats-finder sci-biology/trf-binsci-biology@gentoo.org Download link http://tandem.bu.edu/trf/downloads/trf409.linux32 is a permanent redirect to its HTTPS counterpart https://tandem.bu.edu/trf/downloads/trf409.linux32 and should be updated.
twinscan sci-biology/twinscansci-biology@gentoo.org Homepage link https://mblab.wustl.edu/software.html is dead (SSL error: self signed certificate) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
vague sci-biology/vague-binmmokrejs@fold.natur.cuni.cz Homepage link https://vicbioinformatics.com/software.vague.shtml is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
vague sci-biology/vague-binmmokrejs@fold.natur.cuni.cz Download link https://vicbioinformatics.com/vague-1.0.5.tar.gz is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints).
vague sci-biology/vague-binsci-biology@gentoo.org Homepage link https://vicbioinformatics.com/software.vague.shtml is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
vague sci-biology/vague-binsci-biology@gentoo.org Download link https://vicbioinformatics.com/vague-1.0.5.tar.gz is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints).
varscan sci-biology/VarScansci@gentoo.org Homepage link http://varscan.sourceforge.net/ is a permanent redirect to its HTTPS counterpart https://varscan.sourceforge.net/ and should be updated.
velvetoptimiser sci-biology/VelvetOptimisermmokrejs@fold.natur.cuni.cz Homepage link https://vicbioinformatics.com/software.velvetoptimiser.shtml is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).
velvetoptimiser sci-biology/VelvetOptimisersci-biology@gentoo.org Homepage link https://vicbioinformatics.com/software.velvetoptimiser.shtml is dead (Connect timeout (60 seconds)) for more than a month and should be replaced by alive link (see other packages for hints, or link to archive.org as a last resort).