Projects

131 project(s) on this page

Project Selected Spr Newest Outdated Ignored
gappa 0.4.0 4 1.3.53 1.3.3 1.3.2 1.3.1
gatk 4.1.7.0 5 4.1.5.0 4.0.7.0 4.0.6.0 3.8-1 2.4 9999
gblocks 0.91b 3 0.91b2
gemma 0.98.1 4 0.98.12 0.98
genome-painter 0.0.6 2 0.0.8
ghostz 1.0.2 2 1.0.2
gmap-gsnap 2019-09-12 2 2019.03.15
groot 0.8.5 2 18.8
gzstream 1.5 5 1.54
harvest-tools 1.3 2 1.3
hisat2 2.2.0 7 2.2.02 2.1.0.232 2.1.02 2.0.52
hmmer 2.4i 16 3.310 3.2.12 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
idba 1.1.3 3 1.1.32 1.1.2
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
infernal 1.1.3 7 1.1.35 1.1.2 1.1.1 1.1rc4 1.0.22
iqtree 1.6.12 4 2.0.42 1.6.122 1.6.11 1.6.9 1.6.5 1.6.1 1.5.3 1.3.11.1
iva 1.0.9 3 1.0.9 1.0.8 0.10.1
ivar 1.2.2 2 1.2.2
jellyfish-k-mer 2.2.10 6 2.3.02 2.2.103 2.2.8 2.2.6 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
kaiju 1.7.0 2 1.6.3
kalign 3.1.1 4 3.2.3 2.032 2.0.4
kma 1.2.21 3 1.2.26 1.2.25 1.2.22 1.2.212 1.2.10a
kmc 3.1.1 3 2.3 2.0
kraken 1.1.1 5 1.1.12 1.12 0.10.5beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.0.9 3 2.0.8beta 2.0.8-beta
kssd 1.0 2 1.0
last 1047 5 1061 10602 1047 1045 983 963 938 921 830 712 490 393 299 230 189
lastz 1.04.00 2 1.04.00
libbigwig 0.4.4 5 0.4.44 0.4.2
libdivsufsort 2.0.1 9 2.0.18 9999
libgff 1.2 3 1.02
libmuscle 3.7 3 3.72
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
mapcaller 0.9.9.37 2 0.9.9.37
mash-genome-distance 2.2.2 4 2.2.22 2.2 2.12 2.0 1.1.1
mcl 14-137 8 14.1372 14_137 14-137 14 12.135 12 11 09_308 08.312 1.008.09.149
megahit 1.2.9 2 1.2.9
meme-motif-discovery 5.1.0 4 5.1.1 5.1.0 4.11.2_p2
metabat 2.13 3 2.12.1 0.32.4
mhap 2.1.3 2 2.1.3 2.1.1 1.6
minced 0.4.0 2 0.3.2
minia 3.2.1 4 3.2.1 3.2.1git20200522.4960 3.2.1git20200409.489 1.6906 1.6088 1.6067 3.2.1.r12.g5b131b9
miniasm 0.3 3 0.32 0.2
minimap 0.2 2 0.2
minimap2 2.17 6 2.175 2.15
mmtf-cpp 1.0.0 11 1.0.010
mosdepth 0.2.9 3 0.2.9 0.2.6 0.2.3
mothur 1.42.3 5 1.44.12 1.43.0 1.42.1 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mrbayes 3.2.7 7 3.2.7a2 3.2.72 3.2.6 3.2.3 3.2.2 3.1.23
Project Selected Spr Newest Outdated Ignored
mreps 2.6.01 2 2.6.01
mummer 3.23 6 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 11 3.8.15516 3.8.315
nanopolish 0.12.0 3 0.13.2 0.11.3 0.11.1-1.6331dc4 0.11.1 0.11.0 0.9.0 0.5.0 0.4.0
newick-utils 1.6 4 1.6 1.5.0 1.6-1.da121155
nextflow 19.04.1 3 20.04.12
orfm 0.7.1 2 0.7.1
paml 4.9i 8 4.9j3 4.9i 4.9h2 4.9g 4.9e 4.8 4.7 4.5 4.4e 4.4c
pandaseq 2.11 2 2.11
parasail 2.4.1 2 2.4.2
parsnp 1.2 2 1.2.1 1.2
pathvisio 3.3.0 2 3.3.0
peat 1.2.5 2 1.0.2
phylip 3.697 9 3.6973 3.6963 3.6952 3.694
phylobayes 4.1e 2 4.1b
phyml 3.3.20190321 8 3.3.201909095 3.3.20190321 3.3.20180621 3.3.20180214 3.3.20170530 3.2.0 2.4.5 r121.ab59039 201204122 20110919
phyx 1.01 2 1.01 0.999
pilon 1.23 2 1.23
porechop 0.2.4 3 0.2.4 0.2.3-1.289d5dc
pplacer 1.1.alpha17 2 1.1.alpha19
prank 170427 5 170427 140603 100802 0.0.170427 0.0.150803 0.0.140110
prokka 1.14.6 2 1.14.6 1.14.5 1.13.7
pymol 2.3.0 16 2.4.02 2.3.3 2.3.011 2.2.02 2.1.02 1.9.0.0.svn4184 1.8.6.02 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 r4631.844bf876 r4593.4948dd0f
python:matplotlib 2.2.3 34 3.2.117 3.1.33 3.1.24 3.1.12 3.0.33 3.0.23 2.2.54 2.2.48 2.2.37 2.2.24 2.1.2 2.1.1 2.1.0 2.0.2 2.0.03 1.5.3 1.5.14 1.5.0 1.4.3 1.4.2 1.3.12 1.2.1 1.2.02 1.1.1rc1.git20120423 0.99.1.22 r26679.b9b02f189
quast 5.0.2 2 5.0.2
quip 1.1.8 2 7.11.1
r8s 1.81 2 1.80
racon 1.4.10 2 1.4.13 1.4.10 1.3.2
raxml 8.2.12 8 8.2.125 8.2.11 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
repeatmasker 4.0.7 4 4.1.0 4.0.5 4.0.1
rmblast 2.2.28 3 2.2.28 1.2
roary 3.13.0 3 3.13.0 3.12.02 3.8.0 3.6.0
rtg-tools 3.9 2 3.8.4
ruby:rails 1.5.1 20 6.0.3.17 6.0.32 6.0.2.23 6.0.2 5.2.4.33 5.2.4.23 5.2.4.12 5.2.35 5.2.2.12 5.2.2 5.2.12 5.1.74 5.1.6 5.1.5 5.1.42 5.0.7.2 5.0.2 4.2.11.3 4.2.11.13 4.2.10 4.2.7.1 4.2.62 4.2.4 4.1.8 4.1.1 4.0.2 3.2.19 3.2.18 3.2.16 3.2.13 3.0.5 2.3.14.1 2.3.14 2.3.5 1.1.6
salmid 0.1.23 2 0.1.23
salmon 1.2.1 4 1.2.1 0.13.12 0.12.0 0.7.2
sambamba 0.6.8 4 0.7.12 0.7.0 0.6.7
samblaster 0.1.24 3 0.1.25 0.1.242
sdsl-lite 2.1.1 5 2.1.13 2.0.3 v2.1.1.r132.gddb0fbbc
seq-gen 1.3.4 3 1.3.4 1.3.32 1.3.2
seqan 3.0.0 2.4.0 9 3.0.1 2.4.07 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 9999 3.0.0.r465.g4cdd84b2 r.fcad60a
seqkit 0.12.1 2 0.11.0
sga 0.10.15 3 0.10.152
sibelia 3.0.7 2 3.0.7
ska-split-kmer 1.0 2 1.0
skesa 2.4.0 2 2.4.0 2.3.0
smalt 0.7.6 2 0.7.6
snp-dists 0.7.0 2 0.7.0
snp-sites 2.5.1 3 2.5.12 2.4.1 2.3.3 2.3.2 2.1.3 1.5.0
snpeff 4.3t 4 4.3t2 4_3t
Project Selected Spr Newest Outdated Ignored
sortmerna 2.1 4 3.0.3 2.1b 2.1 2.0
stacks 2.41 6 2.532 2.412 2.4 2.22 2.1 2.0Beta9 2.0Beta8c 1.44 1.35
staden-io-lib 1.14.11 4 1.14.12 1.14.112 1.14.9 1.14.8 1.14.6 1.13.7 1.13.5 1.12.42
stringtie 1.3.6 7 2.1.2 2.1.13 2.0.4 1.3.62 1.2.1
subread 2.0.0 3 2.0.1 2.0.0 1.6.5 1.6.3 1.6.2 1.6.02 1.5.1 1.5.0
sumaclust 1.0.31 3 1.0.36 1.0.35 1.0.34 1.0.31 1.0.20 1.0.10
swipe 2.1.0 2 2.1.0
tbl2asn 25.8 2 24.3
transabyss 2.0.1 2 1.5.3
transdecoder 5.5.0 3 5.4.0 5.0.1 3.0.1 2.0.1
trf-tandem-repeats-finder 4.09 3 4.07b 4.04
trimadap 0.1.11 2 0.1.3
trimal 1.4.1 3 1.4.12
trimmomatic 0.39 6 0.393 0.383 0.36 0.35 0.32
trinityrnaseq 2.8.6 2 2.10.0 2.6.6 2.5.1 2.2.0
trnascan-se 2.0.4 5 2.0.52 2.0.32 2.0.0 1.31 1.3.1
unicycler 0.4.7 2 0.4.8 0.4.7
varscan 2.4.3 3 2.4.3 2.4.2 2.3.9 2.3.7
vcflib 1.0.1 4 1.0.1 1.0.0.r1.130 v1.0.0.rc1.r127.gac59d4f
velvet 1.2.10 7 1.2.106 1.1.07 1.0.18
velvetoptimiser 2.2.6 2 2.2.6 2.2.5
verticalize 1.0.1 3 1.0.1 r9.57f8c91
viennarna 2.4.14 5 2.4.144
virulign 1.0.2 2 1.0.2
vmatch 2.3.1 2 2.3.1
vsearch 2.14.1 6 2.14.23 2.14.1 2.13.6 2.13.4 2.10.4 2.9.1 2.8.0 2.7.1 2.3.4 1.1.3
vt 0.5772 2 0.5772
wiggletools 1.2.3 2 1.2.3
wise2 2.4.1 9 2.4.15 2.4.0_alpha 2.2.04
wish 1.0 2 1.3.r7905f84
wtdbg2 2.5 2 2.5

Legend: