53 project(s) on this page
| Project | Selected | Spr | Newest | Outdated | Ignored |
|---|---|---|---|---|---|
| andi | 0.13 | 4 | 0.143 | 0.13 0.12 0.10 0.9.6.1 | |
| bali-phy | 3.6.0 | 3 | 3.6.12 | 3.6.0 3.4.1 3.4 | |
| bandage | 0.8.1 | 5 | 0.9.02 | 0.8.13 | |
| beast2 | 2.6.3 | 4 | 2.6.72 | 2.6.6 2.6.4 2.6.3 2.6.0 2.5.1 2.4.7 2.4.4 | |
| bowtie∗ | 1.3.0 | 13 | 1.3.14 | 1.3.08 1.2.34 1.2.2 1.1.22 1.1.1 1.0.1 1.0.0 0.12.72 | |
| canu | 1.9 | 7 | 2.22 | 2.1.1 2.02 1.9 1.82 1.7.1 1.6 | r10451.g6c4193847 |
| delly∗ | 0.8.5 | 5 | 1.0.32 | 0.9.12 0.8.72 0.8.3 0.8.2 0.8.1 | |
| dssp∗ | 3.1.4 | 8 | 4.0.42 | 4.0.3 4.0.0 3.1.44 3.0.11 3.0.02 2.2.13 | |
| fastp | 0.20.1 | 9 | 0.23.25 | 0.23.1 0.20.13 0.20.03 0.19.6 r337.424900e | |
| filtlong | 0.2.0 | 5 | 0.2.12 | 0.2.0-1.d1bb46d 0.2.02 | |
| freebayes | 1.3.2 | 8 | 1.3.64 | 1.3.54 1.3.2 1.3.1 1.2.02 1.1.0 | |
| gatk | 4.2.0.0 | 6 | 4.2.6.12 | 4.2.6.0 4.2.0.0 4.0.6.0 3.8-1 2.4 | 9999 |
| hmmer | 2.4i | 17 | 3.3.210 | 3.33 3.2.1 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23 | |
| infernal | 1.1.3 | 8 | 1.1.44 | 1.1.32 1.1.22 1.1.1 1.1~rc4 1.0.22 | |
| ivar | 1.3 | 3 | 1.3.12 | 1.3 | |
| jmol | 14.31.34 | 17 | 14.32.553 | 14.32.542 14.32.47 14.32.45 14.32.22 14.32.7 14.32.3 14.31.54 14.31.49 14.31.442 14.31.382 14.31.35 14.31.34 14.31.20 14.31.18 14.31.8 14.31.0 14.30.0 14.29.54 14.29.52 14.27.2 14.6.4+2016.11.05 14.6.02 14.2.9_2014.11.23 12.2.32 12.2.27 12.2.2 12.0.45 | |
| kraken2∗ | 2.1.1 | 5 | 2.1.22 | 2.1.13 2.0.8~beta | |
| last | 1133 | 7 | 12823 | 1268 12602 1256 11793 1060 963 921 830 712 490 393 299 230 189 | |
| lastz | 1.04.03 | 5 | 1.04.154 | 1.04.032 | |
| libbigwig | 0.4.4 | 6 | 0.4.63 | 0.4.43 | 9999 |
| mash-genome-distance | 2.2.2 | 5 | 2.33 | 2.2.2 2.12 2.0 1.1.1 | |
| minimap2∗ | 2.17 | 9 | 2.247 | 2.23 2.22 2.20 2.172 2.15 2.14 | 2.17.r46.gc9874e2 |
| mosdepth | 0.3.1 | 4 | 0.3.33 | 0.3.2 0.3.12 0.2.3 | |
| mothur | 1.44.3 | 6 | 1.47.03 | 1.46.12 1.44.3 1.42.1 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21 | |
| mrbayes∗ | 3.2.7 | 8 | 3.2.7a4 | 3.2.74 3.2.6 3.2.3 3.2.2 3.1.23 | |
| muscle-sequence-alignment | 3.8.1551 | 12 | 5.13 | 3.8.15515 3.8.315 | |
| ncbi-blast+∗ | 2.2.31 2.2.26 | 15 | 2.13.04 | 2.12.04 2.11.06 2.10.1 2.9.02 2.8.12 2.7.1 2.6.02 2.2.313 2.2.30 2.2.292 2.2.28 2.2.27 2.2.262 2.2.25 | |
| phylip | 3.697 | 9 | 3.6982 | 3.6975 3.6962 3.695 3.693 | |
| phyml∗ | 3.3.20200621 | 8 | 3.3.202204082 | 3.3.202112312 3.3.202006214 3.3.20190909 3.3.20180621 3.3.20170530 3.2.0 2.4.5 | r121.ab59039 201204122 20110919 |
| pilon | 1.23 | 4 | 1.242 | 1.23 1.222 | |
| plink∗ | 1.90b5 | 10 | 1.90.b6.17 1.076 | 1.90~b6.16-200217 1.90~b6.6-181012 1.90~b5.2-180109 1.90~b3.45-170113 1.90~b3.31-160203 1.90b3 1.9-beta6.10 v1.90b6.26 | 1.9.r40.gdcc7785a 1.90_pre140514 1.90~b6.24-211108 1.90~b6.21-201019 |
| pplacer | 1.1.alpha17 | 4 | 1.1.alpha192 1.1~alpha19 | ||
| pymol∗ | 2.4.0 | 19 | 2.5.011 | 2.4.1 2.4.05 2.3.3 2.3.07 2.2.02 2.1.0 1.9.0.0.svn4184 1.8.6.0 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 | r4806.c7095ec2 20220504-8b553202 2.5.2 2.5.1 |
| python:matplotlib∗ | 3.3.4 | 40 | 3.5.212 | 3.5.114 3.5.02 3.4.37 3.4.24 3.4.1 3.3.44 3.3.34 3.3.2 3.3.1 3.2.22 3.2.14 3.1.3 3.1.22 3.1.1 3.0.33 3.0.2 2.2.56 2.2.43 2.2.35 2.2.22 2.1.2 2.1.1 2.0.2 2.0.02 1.5.13 1.4.3 1.4.2 1.3.12 1.2.1 1.2.02 1.1.1~rc1+git20120423 0.99.1.22 | r26679.b9b02f189 |
| racon | 1.4.13 | 5 | 1.5.02 | 1.4.20 1.4.10 1.4.32 1.3.2 1.3.1 | 1.4.20.r0.g8185f8e |
| raptor∗ | 1.1.0 | 39 | 2.0.1539 | 2.0.14.1 2.0.14 2.0.13 2.0.92 2.0.8 2.0.6 2.0.3 2.0.2 2.0.0 1.4.2112 1.4.20 1.4.19 1.4.18 0~git20211220.754cdbf | |
| repeatmasker∗ | 4.0.7 | 4 | 4.1.2_p1 4.1.2-p1 | 4.0.1 | |
| rna-star | 2.7.5c | 10 | 2.7.10a5 | 2.7.9a 2.7.9.a 2.7.8a3 2.7.6a 2.7.3a2 2.7.2a 2.7.1a 2.7.0a 2.5.4b 2.5.3a 2.5.2b 2.5.0a | |
| ruby:rails∗ | 1.5.1▲ | 21 | 7.0.33 | 7.0.2.44 7.0.2.34 7.0.2.2 7.0.1▲ 6.1.62 6.1.5.12 6.1.5 6.1.4.7 6.1.4.6 6.1.4.4▲ 6.1.4.1▲4 6.1.4▲ 6.1.3.2▲2 6.1.3▲ 6.1.2.1▲ 6.0.52 6.0.4.82 6.0.4.7 6.0.4.4▲ 6.0.4.1▲2 6.0.3.7▲ 6.0.3.5▲ 6.0.3.4▲ 6.0.3.3▲ 6.0.2.2▲ 5.2.82 5.2.7.12 5.2.7 5.2.6▲2 5.2.4.4▲ 5.2.4.3▲ 5.2.4.1▲ 5.2.3▲4 5.2.2.1▲ 5.2.2▲ 5.2.1▲2 5.1.7▲2 5.1.6▲ 5.1.5▲ 5.1.4▲2 5.0.7.2▲ 5.0.2▲ 4.2.11.3▲ 4.2.11.1▲ 4.2.10▲ 4.2.7.1▲ 4.2.6▲2 4.2.5.1▲ 4.2.4▲ 4.1.8▲ 4.1.1▲ 4.0.2▲ 3.2.19▲ 3.2.18▲ 3.2.16▲ 3.2.13+1▲ 3.0.5▲ 2.3.14.1▲ 2.3.14▲ 2.3.5▲ 1.5.1▲ 1.1.6▲ | |
| salmon | 1.3.0 | 7 | 1.6.03 | 1.4.03 1.2.2 0.12.0 0.10.2 0.7.2 | |
| sambamba | 0.7.1 | 6 | 0.8.24 | 0.8.1 0.8.02 0.6.7 0.6.6 | |
| seqan | 3.0.2 2.4.0 | 12 | 3.1.05 | 3.0.33 3.0.22 3.0.1 2.4.010 2.3.2 2.3.1 2.2.0 1.4.25 1.4.1 1.3.12 1.3 | 9999 3.0.0.r465.g4cdd84b2 r.fcad60a |
| seqkit | 0.15.0 | 6 | 2.2.03 | 2.1.02 0.16.0 0.15.0 0.10.1 | |
| sortmerna | 2.1 | 5 | 4.3.42 | 4.2.0 2.1 2.0 | 2017-07-13 |
| stacks | 2.41 | 9 | 2.604 | 2.59 2.552 2.53 2.41 2.4 2.2 2.1 2.0Beta8c 1.44 1.35 1.8.3 1.8.2 1.8.1 1.8.0 1.7.6 1.7.5 1.7.4 1.7.3 1.7.1 1.7.0 1.6.3 1.6.2 1.6.1 1.5.7 1.5.6 1.5.5 1.5.4 1.5.3 1.5.2 1.5.1 1.4.7 1.4.6 1.4.5 | |
| staden-io-lib∗ | 1.14.13 | 5 | 1.14.142 | 1.14.13 1.14.11 1.14.9 1.14.82 1.14.6 1.13.7 1.13.5 1.12.42 | |
| subread | 2.0.1 | 7 | 2.0.34 | 2.0.22 2.0.1 2.0.0 1.6.3 1.6.0 1.5.1 1.5.0-p1 | |
| trf-tandem-repeats-finder∗ | 4.09 | 4 | 4.09.12 | 4.09 4.04 | |
| unikmer | 0.11.0 | 3 | 0.18.82 | 0.18.3 | 0.19.0 |
| varscan | 2.4.3 | 5 | 2.4.42 | 2.4.3 2.4.2 2.3.9 2.3.7 | |
| Project | Selected | Spr | Newest | Outdated | Ignored |
| vcflib∗ | 1.0.1 | 5 | 1.0.32 | 1.0.22 | v1.0.0.rc1.r127.gac59d4f |
| viennarna∗ | 2.4.17 | 7 | 2.5.04 | 2.4.182 2.4.172 | |
| vt | 0.5772 | 6 | 0.577212 | 0.57722 | 9999 |
Legend: