Projects

114 project(s) on this page

Project	Selected	Spr	Newest	Outdated	Ignored
adam	0.34.0	2	1.1.1
andi	0.13	4	0.143	0.13 0.12 0.10 0.9.6.1
arcs	1.2.1	2	1.2.2
artemis-genome-viewer	17.0.1	4	18.2.0	18.1.02 17.0.1.11 17.0.1 16.0.17 16.0.0
bali-phy	3.6.0	3	3.6.12	3.6.0 3.4.1 3.4
bandage	0.8.1	5	0.9.02	0.8.13
bbtools∗	38.87	2	38.97	1.9
bcalm∗	2.2.2	3	2.2.3	2.2.1	2.2.0.r49.g890ea4a
beast2	2.6.3	4	2.6.72	2.6.6 2.6.4 2.6.3 2.6.0 2.5.1 2.4.7 2.4.4
bfc	r181	3	0.2	g20150417
blat	36	5	37	34 3.2.24 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bmdca	0.8.12	2	0.8.13
bowtie∗	1.3.0	13	1.3.15	1.3.08 1.2.34 1.2.2 1.1.22 1.1.1 1.0.1 1.0.0 0.12.72
busco	5.0.0	4	5.4.2	5.3.2 5.3.1 5.2.2 5.0.0 4.1.3	3.0.0
canu	1.9	7	2.22	2.1.1 2.02 1.9 1.82 1.7.1 1.6	r10451.g6c4193847
cap3	2015-02-11	3	20091029	2015-02-11
centrifuge	1.0.3	3	1.0.4	1.0.3 1.0.3~beta
circlator	1.5.5	2	1.5.6	1.5.5 1.4.1
delly∗	0.8.5	5	1.0.33	0.9.12 0.8.72 0.8.3 0.8.2 0.8.1
dida	1.0.1	3	1.0.20	1.0.4	1.0.4.r5.gbcb26e5 4.2.7.0 4.2.6.0 4.2.5.0 4.2.4.0 4.2.3.0 4.2.2.0 4.2.1.0 4.2.0.0 4.1.5.0 4.1.4.0 4.1.3.6 4.1.3.0 4.1.2.6 4.1.2.0 4.1.1.0 4.0.5.2 3.9.1.0 3.7.8.8
dssp∗	3.1.4	9	4.0.5	4.0.42 4.0.3 4.0.0 3.1.44 3.0.11 3.0.02 2.2.13
dwgsim	0.1.12	3	0.1.13	0.1.122 0.1.11	r159.39a1bbb
e-mem	1.0.1	4	28oct2015	1.0.12
exabayes	1.5	3	1.5.1	1.4.1
falco∗	0.2.4	2	0.31.0	0.29.1	0.30.0.r0.gbb811332
fasta	36.3.8h	7	36.3.8h.2020.05.04	36.3.8h.2020-02-11 36.3.8h2 36.3.8g3 36.3.8 36.3.5e 21.1.1
fastani	1.32	3	1.332
fastp	0.20.1	9	0.23.26	0.23.1 0.20.13 0.20.03 0.19.6
filtlong	0.2.0	5	0.2.12	0.2.0-1.d1bb46d 0.2.02
finch-rs∗	0.3.0	2	0.4.1
flye∗	2.8.3	2	2.9
freebayes	1.3.2	8	1.3.65	1.3.53 1.3.2 1.3.1 1.2.0 1.1.0
gatk	4.2.0.0	6	4.2.6.13	4.2.0.0 4.0.6.0 3.8-1 2.4	9999
gemma	0.98.4	5	0.98.52	0.98.4 0.98.32 0.98.1
gffcompare∗	0.12.1	4	0.12.6	0.12.2 0.10.15-1.be56ef4
groot∗	1.1.2	3	18.8	1.0.0.r57.g05fe640
hmmer	2.4i	17	3.3.211	3.33 3.2.1 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
infernal	1.1.3	8	1.1.44	1.1.32 1.1.22 1.1.1 1.1~rc4 1.0.22
iqtree∗	1.6.12	5	2.1.2	2.0.7 2.0.6 1.6.122 1.6.9 1.6.1 1.5.3 1.3.11.1
iqtree2∗	2.0.7	2	2.1.3
iva	1.0.9	2	1.0.11	1.0.9 1.0.8
ivar	1.3	3	1.3.12	1.3
jmol	14.31.34	17	14.32.682	14.32.672 14.32.662 14.32.64 14.32.622 14.32.55 14.32.45 14.32.25 14.32.22 14.32.3 14.31.54 14.31.49 14.31.442 14.31.382 14.31.35 14.31.34 14.31.20 14.31.18 14.31.8 14.31.0 14.30.0 14.29.54 14.29.52 14.27.2 14.6.4+2016.11.05 14.6.02 14.2.9_2014.11.23 12.2.32 12.2.27 12.2.2 12.0.45
kalign	3.3	4	3.3.2	3.3.1 3.3 2.03+20110620 2.03 2.0.4
kma	1.3.6	3	1.4.32	1.3.28 1.3.23 1.3.10 1.2.21
kmc	3.1.1	3	3.2.1	3.1.1 2.3 2.0
kraken∗	1.1.1	7	2.1.1	1.1.13 1.12 1.0 0.10.5~beta 0.1	r70.2c5f7ce 32.368a837
kraken2∗	2.1.1	5	2.1.22	2.1.13 2.0.8~beta
last	1133	7	14063	1389 1282 1268 1260 1256 11793 1060 963 921 830 712 490 393 299 230 189
lastz	1.04.03	5	1.04.154	1.04.032
Project	Selected	Spr	Newest	Outdated	Ignored
libbigwig	0.4.4	6	0.4.63	0.4.43	9999
libpll	0.3.2	3	1.0.11	0.3.2 0.3.1
lofreq	2.1.3.1	2	2.1.5
maker	2.31.11	2	3.01.03
mash-genome-distance	2.2.2	5	2.33	2.2.2 2.12 2.0 1.1.1
masurca	3.4.1	3	4.0.9	4.0.1
meme-motif-discovery∗	5.1.0	5	5.3.3	5.3.0 5.2.0 4.11.2_p2
minia∗	3.2.1	4	3.2.6	3.2.1+git20200522.4960a99 3.2.1 1.6906 1.6088 1.6067	3.2.1.r12.g5b131b9
minigraph	0.10	2	0.13
minimap2∗	2.17	9	2.247	2.23 2.22 2.20 2.172 2.15 2.14	2.17.r46.gc9874e2
mosdepth	0.3.1	4	0.3.33	0.3.2 0.3.12 0.2.3
mothur	1.44.3	6	1.48.03	1.47.02 1.46.1 1.44.3 1.42.1 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mrbayes∗	3.2.7	8	3.2.7a4	3.2.74 3.2.6 3.2.3 3.2.2 3.1.23
muscle-sequence-alignment	3.8.1551	12	5.13	3.8.15515 3.8.315
nanopolish	0.12.0	5	0.14.0	0.13.3 0.13.22 0.11.3 0.11.1-1.6331dc4 0.11.0 0.10.2 0.9.0 0.5.0 0.4.0	9999 0.13.2.r6.g05b1bf4
ncbi-blast+∗	2.2.31 2.2.26	15	2.13.04	2.12.04 2.11.06 2.9.02 2.8.12 2.7.1 2.6.02 2.2.313 2.2.30 2.2.292 2.2.28 2.2.27 2.2.262 2.2.25
nextflow	20.07.1	5	22.04.5	22.04.3 21.10.6 21.04.1
paml∗	4.9j	10	4.10.5	4.10.3 4.9j6 4.9h 4.9g 4.9e 4.8 4.7 4.4e 4.4c
parasail	2.4.2	2	2.5	2.4.3
parsnp	1.5.2	2	1.7.4	1.6.2 1.5.4 1.2.1 1.2
percolator	3.05	4	3.06	3.05 3.04 3.3 3.03 3.02.01 3.02.00 3.01	3.05.r140.g74a8b157
phylip	3.697	9	3.6982	3.6975 3.6962 3.695 3.693
phyml∗	3.3.20200621	8	3.3.202204083	3.3.202112312 3.3.202006212 3.3.20190909 3.3.20180621 3.3.20170530 3.2.0 2.4.5	r121.ab59039 201204122 20110919
phyx	1.01	2	1.3	1.01 0.999
pilon	1.23	4	1.242	1.23 1.222
pirate	1.0.4	2	5.5.1
plink∗	1.90b5	10	1.90.b6.17 1.076	1.90~b6.16-200217 1.90~b6.6-181012 1.90~b5.2-180109 1.90~b3.45-170113 1.90~b3.31-160203 1.90b3 1.9-beta6.10 v1.90b6.26	1.9.r40.gdcc7785a 1.90_pre140514 1.90~b6.26-220402 1.90~b6.21-201019
portcullis	1.1.0	2	1.2.3
pplacer	1.1.alpha17	4	1.1.alpha192 1.1~alpha19
pymol∗	2.4.0	19	2.5.011	2.4.1 2.4.05 2.3.3 2.3.07 2.2.02 2.1.0 1.9.0.0.svn4184 1.8.6.0 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12	r4806.c7095ec2 20220712-95d3d1eb 2.5.2 2.5.1
python:matplotlib∗	3.3.4	40	3.5.217	3.5.111 3.5.02 3.4.35 3.4.24 3.4.1 3.3.44 3.3.34 3.3.2 3.3.1 3.2.22 3.2.14 3.1.3 3.1.22 3.1.1 3.0.33 3.0.2 2.2.56 2.2.43 2.2.35 2.2.2 2.1.2 2.1.1 2.0.2 2.0.02 1.5.13 1.4.3 1.4.2 1.3.12 1.2.1 1.2.02 1.1.1~rc1+git20120423 0.99.1.22	r26679.b9b02f189
quip	1.1.8	2	7.63.1
racon	1.4.13	5	1.5.02	1.4.20 1.4.10 1.4.32 1.3.2 1.3.1	1.4.20.r0.g8185f8e
raptor∗	1.1.0	39	2.0.1539	2.0.14.1 2.0.14 2.0.13 2.0.92 2.0.8 2.0.6 2.0.3 2.0.2 2.0.0 1.4.2112 1.4.20 1.4.19 1.4.18 0~git20220501.ae6cc23	2022-06-06
repeatmasker∗	4.0.7	4	4.1.2_p1 4.1.2-p1	4.0.1
rna-star	2.7.5c	10	2.7.10a5	2.7.9a 2.7.9.a 2.7.8a3 2.7.6a 2.7.3a2 2.7.2a 2.7.1a 2.7.0a 2.5.4b 2.5.3a 2.5.2b 2.5.0a
rtg-tools	3.11	3	3.12.1	3.12
ruby:rails∗	1.5.1▲	22	7.0.3.17	7.0.32 7.0.2.33 7.0.1▲ 6.1.6.13 6.1.4.73 6.1.4.6 6.1.4.4▲ 6.1.4.1▲3 6.1.4▲ 6.1.3.2▲2 6.1.3▲ 6.1.2.1▲ 6.0.5.13 6.0.4.7 6.0.3.7▲ 6.0.3.4▲ 6.0.3.3▲ 6.0.2.2▲ 5.2.8.13 5.2.7 5.2.4.4▲ 5.2.4.3▲ 5.2.4.1▲ 5.2.3▲4 5.2.2.1▲ 5.2.2▲ 5.2.1▲2 5.1.7▲2 5.1.6▲ 5.1.5▲ 5.1.4▲2 5.0.7.2▲ 5.0.2▲ 4.2.11.3▲ 4.2.11.1▲ 4.2.10▲ 4.2.7.1▲ 4.2.6▲2 4.2.5.1▲ 4.2.4▲ 4.1.8▲ 4.1.1▲ 4.0.2▲ 3.2.19▲ 3.2.18▲ 3.2.16▲ 3.2.13+1▲ 3.0.5▲ 2.3.14.1▲ 2.3.14▲ 2.3.5▲ 1.5.1▲ 1.1.6▲
salmon	1.3.0	7	1.6.03	1.4.03 1.2.2 0.12.0 0.10.2 0.7.2
sambamba	0.7.1	6	0.8.24	0.8.1 0.8.02 0.6.7 0.6.6
sdsl-lite∗	2.1.1	7	3.0.1	3.0.0 2.1.14 2.0.3 v2.1.1.r132.gddb0fbbc
seqan	3.0.2 2.4.0	12	3.2.03	3.2.0~rc1 3.1.05 3.0.33 3.0.22 3.0.1 2.4.010 2.3.2 2.3.1 2.2.0 1.4.25 1.4.1 1.3.12 1.3	9999 3.0.0.r465.g4cdd84b2
seqkit	0.15.0	6	2.2.05	2.1.02 0.15.0 0.10.1
slim-simulator∗	3.5	3	3.7.1	3.7.1.r0.g34c9113e
snap-gene-prediction∗	2013-11-29	2	20131129
snpeff	4.3t	8	5.1	5.0 4.3t3 4_3t	2017-11-24 5.1+d
sortmerna	2.1	5	4.3.42	4.2.0 2.1 2.0	2017-07-13
stacks	2.41	9	2.604	2.59 2.552 2.53 2.41 2.4 2.2 2.1 2.0Beta8c 1.44 1.35 1.9.10 1.9.7 1.9.6 1.9.5 1.9.4 1.9.3 1.9.2 1.9.1 1.9.0 1.8.3 1.8.2 1.8.1 1.8.0 1.7.6 1.7.5 1.7.4 1.7.3 1.7.1 1.7.0 1.6.3 1.6.2 1.6.1 1.5.7 1.5.6 1.5.5 1.5.4 1.5.3 1.5.2 1.5.1 1.4.7 1.4.6 1.4.5
staden-io-lib∗	1.14.13	5	1.14.142	1.14.13 1.14.11 1.14.9 1.14.82 1.14.6 1.13.7 1.13.5 1.12.42
stringtie	2.1.4	9	2.2.12	2.2.0 2.1.5 2.1.4 2.1.12 2.0.4 1.3.6 1.3.4d
Project	Selected	Spr	Newest	Outdated	Ignored
subread	2.0.1	7	2.0.34	2.0.22 2.0.1 2.0.0 1.6.3 1.6.0 1.5.1 1.5.0-p1
sumaclust∗	1.0.31	4	1.0.36	1.0.35 1.0.34 1.0.31 1.0.202 1.0.10
tigmint	1.2.2	2	1.2.4
trf-tandem-repeats-finder∗	4.09	4	4.09.12	4.09 4.04
trinityrnaseq∗	2.11.0	4	2.14.0.FULL	2.13.22 2.11.0 2.6.6 2.5.1 2.2.0
trnascan-se	2.0.4	6	2.0.9	2.0.7 2.0.52 2.0.3 2.0.02 1.31 1.3.1
unicycler∗	0.4.7	3	0.5.0	0.4.8 0.4.7
unikmer	0.11.0	3	0.19.02	0.18.82
varscan	2.4.3	5	2.4.42	2.4.3 2.4.2 2.3.9 2.3.7
vcflib∗	1.0.1	5	1.0.33	1.0.2	1.0.3.r330.ga36dbe9
viennarna∗	2.4.17	7	2.5.13	2.5.02 2.4.18 2.4.172
vt	0.5772	6	0.577212	0.57722	9999
wiggletools	1.2.10	2	1.2.11
wish	1.0	2	1.3		1.3.r7905f84

Legend:

• Spread means how many repository families (e.g. all Debian versions as well as Ubuntu and other derivatives make a single family) contain this package.
• newest^#repos - newest known version. The number shows how many repository families have this version.
• devel - newest known devel (or unstable) version. There may be both devel and newest versions for a given package.
• unique - package is only present in a single repository family, there are no other sources to compare it against, so although it's latest version known to repology, is not really reliable.
• outdated - outdated version which requires updating.
• legacy - outdated version when a newer version is present. This is assumed to be legacy version preserved for e.g. compatibility.
• rolling - package is fetched from always latest snapshot or VCS master/trunk, so it is always latest and is not a subject for comparison.
• noscheme - the project does not have official versioning scheme, so versions used in repositories which are basically random.
• incorrect - version is known to be incorrect (e.g. version not officially released yet, or lacking alpha/beta/rc qualifier).
• untrusted - this source is known to likely supply incorrect versions, so is ignored proactively.
• ignored - version is ignored and excluded from comparison for some other reason (e.g. snapshots).
• vulnerable▲ - version is potentially vulnerable as there are related CVEs.