79 project(s) on this page
| Project | Selected | Spr | Newest | Outdated | Ignored |
|---|---|---|---|---|---|
| adam | 0.34.0 | 2 | 1.1.1 | ||
| artemis-genome-viewer | 17.0.1 | 4 | 18.1.02 | 17.0.1.11 17.0.1 16.0.17 16.0.0 | |
| bcalm∗ | 2.2.2 | 3 | 2.2.3 | 2.2.1 | 2.2.0.r49.g890ea4a |
| beast2 | 2.6.3 | 3 | 2.6.4 | 2.6.3 2.6.0 2.5.1 2.4.7 2.4.4 | |
| bfc | r181 | 2 | 0.2 | ||
| bmdca | 0.8.12 | 2 | 0.8.13 | ||
| canu | 1.9 | 6 | 2.1.12 | 2.1 2.0 1.92 1.82 1.6 | r10255.g6d274143e |
| cap3 | 2015-02-11 | 2 | 20091029 | ||
| centrifuge | 1.0.3 | 3 | 1.0.4 | 1.0.3 1.0.3beta | |
| circlator | 1.5.5 | 2 | 1.5.6 | 1.5.5 1.4.1 | |
| delly | 0.8.5 | 5 | 0.8.73 | 0.8.32 0.8.2 0.8.1 | |
| dida | 1.0.1 | 3 | 3.9.1.0 | 3.7.8.8 1.0.4 | 1.0.4.r5.gbcb26e5 |
| dssp | 3.1.4 | 7 | 4.0.0 | 3.1.43 3.0.02 2.2.13 | |
| e-mem | 1.0.1 | 4 | 28oct2015 | 1.0.12 | |
| fasta | 36.3.8h | 6 | 36.3.8h.2020.05.04 | 36.3.8h.2020 36.3.8h 36.3.8g2 36.3.8 36.3.5e 21.1.1 | |
| finch-rs∗ | 0.3.0 | 2 | 0.4.1 | ||
| freebayes | 1.3.2 | 7 | 1.3.53 | 1.3.2 1.3.1 1.2.03 1.1.0 | 1.0.1.r0.gefe685d |
| gffcompare∗ | 0.12.1 | 3 | 0.12.2 | 0.10.15-1.be56ef4 | |
| groot∗ | 1.1.2 | 2 | 18.8 | ||
| hmmer | 2.4i | 16 | 3.3.28 | 3.34 3.2.1 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23 | |
| infernal | 1.1.3 | 7 | 1.1.44 | 1.1.32 1.1.2 1.1.1 1.1rc4 1.0.22 | |
| iqtree∗ | 1.6.12 | 5 | 2.1.2 | 2.0.6 1.6.122 1.6.9 1.6.1 1.5.3 1.3.11.1 | |
| iqtree2∗ | 2.0.7 | 2 | 2.1.3 | ||
| jmol | 14.31.34 | 16 | 14.31.482 | 14.31.47 14.31.46 14.31.444 14.31.38 14.31.352 14.31.34 14.31.20 14.31.18 14.31.8 14.30.0 14.29.54 14.29.52 14.27.2 14.6.4 14.6.02 14.2.9_2014.11.23 12.2.32 12.2.27 12.2.2 12.0.45 | |
| kma | 1.3.6 | 3 | 1.3.19 | 1.3.14 1.3.10 1.3.2 1.2.21 | |
| kraken∗ | 1.1.1 | 6 | 2.1.1 | 1.1.13 1.12 0.10.5beta 0.1 | r70.2c5f7ce 32.368a837 |
| kraken2∗ | 2.1.1 | 4 | 2.1.2 | 2.1.12 2.0.8beta | |
| last | 1133 | 5 | 11794 | 1080 1060 963 921 830 712 490 393 299 230 189 | |
| libbigwig | 0.4.4 | 6 | 0.4.62 | 0.4.43 | 9999 |
| libpll | 0.3.2 | 3 | 1.0.11 | 0.3.2 0.3.1 | |
| lofreq | 2.1.3.1 | 2 | 2.1.5 | ||
| mash-genome-distance | 2.2.2 | 4 | 2.3 | 2.2.2 2.12 2.0 1.1.1 | |
| masurca | 3.4.1 | 2 | 4.0.1 | ||
| meme-motif-discovery∗ | 5.1.0 | 4 | 5.3.3 | 5.2.0 4.11.2_p2 | |
| minigraph | 0.10 | 2 | 0.13 | ||
| minimap2∗ | 2.17 | 8 | 2.21 | 2.202 2.182 2.174 2.15 | 2.17.r46.gc9874e2 |
| mosdepth | 0.3.1 | 4 | 0.3.2 | 0.3.12 0.2.3 | |
| mothur | 1.44.3 | 5 | 1.45.32 | 1.44.3 1.44.2 1.43.0 1.42.1 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21 | |
| mrbayes∗ | 3.2.7 | 7 | 3.2.7a3 | 3.2.72 3.2.6 3.2.3 3.2.2 3.1.23 | |
| nanopolish | 0.12.0 | 5 | 0.13.22 | 0.11.3 0.11.1-1.6331dc4 0.11.0 0.9.0 0.5.0 0.4.0 | 9999 0.13.2.r6.g05b1bf4 |
| ncbi-blast+∗ | 2.2.31 2.2.26 | 14 | 2.12.03 | 2.11.08 2.10.1 2.9.02 2.8.12 2.7.1 2.6.02 2.2.313 2.2.30 2.2.292 2.2.28 2.2.27 2.2.26 2.2.25 | |
| nextflow | 20.07.1 | 3 | 21.04.12 | ||
| parasail | 2.4.2 | 2 | 2.4.3 | 2.4.2 | |
| parsnp | 1.5.2 | 2 | 1.5.4 | 1.2.1 1.2 | |
| phylip | 3.697 | 9 | 3.6982 | 3.6974 3.6963 3.695 3.693 | |
| pilon | 1.23 | 4 | 1.242 | 1.23 | |
| plink2∗ | 1.90b5 | 2 | 2.00a3 | ||
| pplacer | 1.1.alpha17 | 3 | 1.1alpha19 1.1.alpha19 | ||
| pymol∗ | 2.4.0 | 16 | 2.5.1 | 2.5.03 2.4.1 2.4.07 2.3.3 2.3.06 2.2.02 2.1.0 1.9.0.0.svn4184 1.8.6.02 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 | r4806.c7095ec2 20210708-49d4a936 |
| python:matplotlib∗ | 3.3.4 | 39 | 3.4.216 | 3.4.13 3.4.0 3.3.47 3.3.36 3.3.2 3.3.1 3.3.0 3.2.2 3.2.14 3.1.32 3.1.22 3.1.1 3.0.33 3.0.22 2.2.55 2.2.44 2.2.35 2.2.22 2.1.2 2.1.1 2.1.0 2.0.2 2.0.03 1.5.13 1.5.0 1.4.3 1.4.2 1.3.12 1.2.1 1.2.02 1.1.1rc1.git20120423 0.99.1.22 | r26679.b9b02f189 |
| Project | Selected | Spr | Newest | Outdated | Ignored |
| quip | 1.1.8 | 2 | 7.39.1 | ||
| racon | 1.4.13 | 4 | 1.4.21 | 1.4.20 1.4.13 1.4.10 1.4.3 1.3.2 | 1.4.20.r0.g8185f8e |
| raptor∗ | 1.1.0 | 39 | 2.0.1539 | 2.0.14.1 2.0.14 2.0.13 2.0.92 2.0.8 2.0.6 2.0.3 2.0.2 2.0.0 1.4.2112 1.4.20 1.4.19 1.4.18 | |
| repeatmasker∗ | 4.0.7 | 4 | 4.1.2_p1 | 4.0.5 4.0.1 | |
| rna-star | 2.7.5c | 9 | 2.7.9a | 2.7.8a4 2.7.5c 2.7.3a2 2.7.3.a 2.7.2a 2.7.1a 2.7.0a 2.5.4b 2.5.3a 2.5.2b 2.5.0a 2.4.0k | |
| rtg-tools | 3.11 | 3 | 3.12 | 3.8.4 | |
| ruby:rails∗ | 1.5.1▲ | 21 | 6.1.48 | 6.1.3.24 6.1.3▲2 6.1.2.1▲ 6.0.4▲3 6.0.3.7▲3 6.0.3.5▲2 6.0.3.4▲ 6.0.3.3▲ 6.0.2.2▲ 5.2.6▲4 5.2.4.5▲ 5.2.4.4▲ 5.2.4.3▲ 5.2.4.1▲ 5.2.3▲4 5.2.2.1▲ 5.2.2▲ 5.2.1▲2 5.1.7▲2 5.1.6▲ 5.1.5▲ 5.1.4▲2 5.0.7.2▲ 5.0.2▲ 4.2.11.3▲ 4.2.11.1▲ 4.2.10▲ 4.2.7.1▲ 4.2.6▲2 4.2.5.1▲ 4.2.4▲ 4.1.8▲ 4.1.1▲ 4.0.2▲ 3.2.19▲ 3.2.18▲ 3.2.16▲ 3.2.13▲ 3.0.5▲ 2.3.14.1▲ 2.3.14▲ 2.3.5▲ 1.5.1▲ 1.1.6▲ | |
| salmon | 1.3.0 | 6 | 1.4.04 | 1.3.0 1.2.2 0.12.0 0.10.2 0.7.2 | 9999 |
| sambamba | 0.7.1 | 6 | 0.8.04 | 0.7.12 0.6.7 | 9999 |
| seqan | 3.0.2 2.4.0 | 11 | 3.0.36 | 3.0.22 3.0.2rc2 3.0.1 2.4.08 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 | 9999 3.0.0.r465.g4cdd84b2 r.fcad60a |
| seqkit | 0.15.0 | 5 | 0.16.12 | 0.16.0 0.15.02 | |
| snap-gene-prediction | 2013-11-29 | 2 | 20131129 | ||
| snpeff | 4.3t | 6 | 5.0 | 4.3t3 4_3t | |
| sortmerna | 2.1 | 4 | 4.2.0 | 2.1b 2.1 2.0 | |
| stacks | 2.41 | 7 | 2.553 | 2.53 2.41 2.4 2.22 2.1 2.0Beta8c 1.44 1.35 | |
| staden-io-lib∗ | 1.14.13 | 4 | 1.14.14 | 1.14.13 1.14.11 1.14.9 1.14.8 1.14.6 1.13.7 1.13.5 1.12.42 | |
| stringtie | 2.1.4 | 8 | 2.1.52 | 2.1.4 2.1.2 2.1.12 2.0.4 1.3.6 1.2.1 | |
| subread | 2.0.1 | 5 | 2.0.2 | 2.0.12 2.0.0 1.6.3 1.6.02 1.5.1 1.5.0 | |
| sumaclust∗ | 1.0.31 | 3 | 1.0.36 | 1.0.35 1.0.34 1.0.31 1.0.20 1.0.10 | |
| trf-tandem-repeats-finder∗ | 4.09 | 4 | 4.09.1 | 4.09 4.07b 4.04 | |
| trnascan-se | 2.0.4 | 5 | 2.0.7 | 2.0.52 2.0.3 2.0.0 1.31 1.3.1 | |
| unicycler | 0.4.7 | 3 | 0.4.9 | 0.4.8 0.4.7 | |
| unikmer | 0.11.0 | 3 | 0.18.1 | 0.18.3 | |
| varscan | 2.4.3 | 4 | 2.4.42 | 2.4.3 2.3.9 2.3.7 | |
| vcflib∗ | 1.0.1 | 5 | 1.0.22 | 1.0.0.r1.130 | v1.0.0.rc1.r127.gac59d4f |
| viennarna∗ | 2.4.17 | 6 | 2.4.183 | 2.4.174 | |
| vt | 0.5772 | 5 | 0.577212 | 0.5772 | 9999 |
| wiggletools | 1.2.10 | 2 | 1.2.11 | ||
| wish | 1.0 | 2 | 1.3 | 1.3.r7905f84 |
Legend: