Projects

198 project(s) on this page

Project	Selected	Spr	Newest	Outdated	Ignored
abacas∗	1.3.1	3	1.3.12
abricate	1.0.1	1	1.0.1
abyss-explorer	2.1.0	1
ale-assemby-likelihood-estimator	0.0.20180904	1
any2fasta	0.4.2	1
apbspdb2pqr∗	1.5	1
aragorn	1.2.38	5	1.2.384	1.2.36
arks	1.0.4	1
art∗	20160605	7		2.0.1 2.0 1.16.2 1.16.1 1.13 1.10.1 0.9.02
ascp∗	3.7.7	1
astral-species-tree	5.7.1	3	5.7.12
bam2fastx	1.3.0	1
bamm-bayesian	2.5.0	1
barrnap	0.9	4	0.92	0.82 0.7
bazam	1.0.1	1
berokka	0.2.3	1
bifrost	1.0.5	2	1.0.5
biobloomtools	2.3.3	1
biomake	0.1.5	1
bodr	10	14	1011	93 8
bonsai-taxonomic-analysis	0.3	1
bracken	2.6.0	2		1.0.0
breseq	0.35.4	2		0.33.2
bwa-mem2	2.0	3		2.0pre1	r183.d43752d
cannoli	0.12.0	1
cd-hit	4.8.1	11	4.8.18	4.6.82 4.6.62 4.6.4 4.6.1-2012-08-27 4.5.7
circos∗	0.69-9	7	0.69_9 0.69.9 0.69-9	0.69.6 0.69-6 0.69.4 0.69 0.66 0.64 0.552 0.49
clipper4coot∗	2.1.20180802	1
clonalframeml	1.12	3	1.122	1.11
clustal-omega∗	1.2.4	12	1.2.410	1.2.2 1.2.1
clustalw∗	2.1	15	2.112	1.832	2.1+lgpl 2.1+lgpl
cluster-picker	1.2.5	1
consel	0.20	2		0.1
crumble	0.8.3	1
cutadapt∗	3.3	4	3.3	2.10 2.1 1.14
das-tool	1.1.2	1
dehomopolymerate	0.4.0	1
discovardenovo∗	52488	2	52488
disty	0.1.0	2	0.1.0
dsh-bio	2.0.3	1
easel	0.46	1
edirect∗	13.8	2		13.3.20200128
elph	1.0.1	5	1.0.14
ema	0.6.2	1
emboss∗	6.6.0	15	6.6.011	6.5.7 6.4.0 6.3.1 6.0.1
epa-ng	0.3.8	1
exonerate	2.4.0	11	2.4.08	2.2.03
express-rna-seq	1.5.3	4	1.5.32	1.5.1
faqcs	2.10	1
fastq-pair	1.0	3	1.02
Project	Selected	Spr	Newest	Outdated	Ignored
fasttree	2.1.11	7	2.1.113	2.1.104 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq	1.1	1
fermi-lite	0.1	2	0.1		0.1+git20190320.b499514
figtree	1.4.4	6	1.4.44	1.4.32 1.4.2 1.4 1.3.1	1.4.4.14
flash-seq∗	1.2.11	5	1.2.114
flowcraft	1.4.1	1
fraggenescan	1.31	3	1.31	1.30
fwdpp	0.8.1	1
gappa-phylogenetic-analysis	0.6.1	1
gblocks	0.91b	4	0.91b3
genome-painter	0.0.8	2	0.0.8
gepard	1.40	1
gfakluge	1.1.2	1
gfalint	1.0.0	1
gfaview	0.0.53	1
ghostz	1.0.2	2	1.0.2
gmap-gsnap∗	2019-09-12	3		2019.03.15	2021-03-08
gzstream	1.5	5	1.54		1.5+git20171107.9a20658
harvest-tools	1.3	2	1.3
hh-suite∗	3.3.0	1
hisat2	2.2.1	9	2.2.17	2.2.0 2.1.0 2.0.5	2.2.1.r8.g49aa20c
hssp∗	3.1.5	3	3.1.5	3.0.10
humann2∗	0.11.1	1
idba	1.1.3	5	1.1.34	1.1.2	9999
indel-seq-gen	2.1.03	2	2.1.03
indelible	1.03	3	1.032
ispcr	33	1
jellyfish-k-mer	2.3.0	8	2.3.06	2.2.10 2.2.8 2.2.7 2.2.6 2.2.4 2.1.4 1.1.122 1.1.11 1.1.10 1.1.2
jspecies	1.2.1	1
k8	0.2.5	2		0.2.4
kaiju	1.7.4	3		1.6.3 1.6.2
kat	2.4.2	2	2.4.2		9999
kent-tools∗	401	1
kmergenie	1.7048	3	1.7048	1.7044
kounta	0.2.3	1
kr-mutation-distances	2.0.2	1
kssd	1.1	2	1.1
legsta	0.5.1	1
libccp4∗	6.5.1	8	6.5.16	6.4.62 6.4.5 6.4.0_rc1	r1861
libdivsufsort	2.0.1	11	2.0.110
libgff	2.0.0	6	2.0.05	1.0
libsequence	1.9.8	2	1.9.8
light-assembler	1.0.0	1
lighter	1.1.2	5	1.1.24		9999
links-scaffolder	1.8.7	1
lrsim	1.0	1
lsd2	1.7.1	1
magic-blast∗	1.3.0	1
mapcaller	0.9.9.39	2	0.9.9.39
maxbin2	2.2.7	1
Project	Selected	Spr	Newest	Outdated	Ignored
mcl	14-137	9	14-1373 14_1372 14.1372	12.135 12-135 11-294 08.312 1.008.09.149
megahit	1.2.9	7	1.2.95	1.1.4
metabat	2.15	5	2.153	0.32.4
mhap	2.1.3	2	2.1.3	2.1.1 1.6
mican	2019.11.27	2	2019.11.27
minced	0.4.2	4	0.4.2	0.3.22
miniasm	0.3	6	0.34	0.2	2018-3-30
minimap	0.2	2	0.2
mir-prefer	0.24	1
mlst	2.19.0	1
mmtf-cpp∗	1.0.0	14	1.0.013
mp-est∗	2.0	1
mreps	2.6.01	3	2.6.012
mummer	3.23	7	4.0.0rc1 3.233	3.22 3.20	4.0.0.b2.2
nanofilt∗	2.7.1	2		2.6.0
newick-utils	1.6	4	1.6	1.5.0	1.6-1.da121155
nextgenmap	0.5.5	1
ngmaster∗	0.5.6	1
ngmerge	0.3	2	0.3
nonpareil-metagenomic-coverage	3.3.4	1
ntcard	1.2.2	3	1.2.22		9999
ntedit	1.3.4	1
nthits	0.0.1	1
ntjoin	1.0.6	1
nullarbor	2.0.20191013	1
nxtrim	0.4.3	3	0.4.32
oases	0.2.08	1
oma	2.4.2	1
orfm	0.7.1	3	0.7.12
pandaseq	2.11	3	2.112
panito	0.0.1	1
pathvisio	3.3.0	2	3.3.0
peat	1.2.5	2		1.0.2
phlawd	3.4b	1
phylobayes	4.1e	2	4.1e
porechop	0.2.4	3	0.2.4	0.2.3-1.289d5dc
prank∗	170427	6	1704272	140603 100802 0.0.170427 0.0.150803 0.0.140110
prokka	1.14.6	4	1.14.63	1.14.5
psmc	0.6.5	3	0.6.5		2016-1-21
pullseq	1.0.2	2	1.0.2
quast	5.0.2	3	5.0.22
quickmerge	0.3	1
quicktree	2.5	3	2.52
r2r	1.0.6	1
r8s	1.81	1
rapidnj	2.3.2	1
raster3d	3.0-7	5	3.0.7 3.0-7	3.0.6 3.0-4 3.0.3 3.0-3 3.0.2 3.0-2 3.0
rasusa∗	0.3.0	1
raven-assembler	0.0.0	1
raxml∗	8.2.12	9	8.2.127	8.2.11 8.2.9 8.2.4 8.1.1 7.2.8 7.2.6
Project	Selected	Spr	Newest	Outdated	Ignored
rcorrector	1.0.4	2	1.0.4
realphy	1.12	1
repaq	0.2.0	1
rmblast∗	2.2.28	3	2.2.28	1.2
roary	3.13.0	3	3.13.0	3.12.02 3.8.0 3.6.0
salmid	0.1.23	2	0.1.23
samblaster	0.1.26	6	0.1.263	0.1.243
samclip	0.4.0	3	0.4.02
sepp	4.3.10	2	4.3.10		4.5.1+really4.5.1
seq-gen	1.3.4	3	1.3.4	1.3.32 1.3.2
sga	0.10.15	5	0.10.153		9999
shovill	1.1.0	2	1.1.0
sibelia	3.0.7	2	3.0.7
simulate-pcr	1.2	1
ska-split-kmer	1.0	3	1.02
skesa	2.4.0	3	2.4.02	2.3.0
smalt	0.7.6	4	0.7.63
snippy	4.6.0	2	4.6.0
snoscan	0.9.1	1
snp-dists	0.7.0	2	0.7.0
snp-sites	2.5.1	3	2.5.12	2.4.1 2.3.3 2.3.2 2.1.3 1.5.0
solexaqa	3.1.7.1	2	3.1.7.1
souporcell	2.0	1
squeakr	0.7	2	0.7
ssm∗	1.4	6	1.43 1.4.02	1.32 1.1 1.0
swipe	2.1.0	2	2.1.0
taxonkit	0.7.2	2			0.13.0 0.12.0
tbl2asn	25.8	3		24.3	2022-04-26
tmalign∗	20190822	2		2016-05-25
transabyss	2.0.1	2		1.5.5
transdecoder	5.5.0	5	5.5.02	5.4.0 5.0.1 3.0.1 2.0.1
treepl	2018.05.22	1
trimadap	0.1.11	2		0.1.3
trimal	1.4.1	4	1.4.13
trimmomatic	0.39	8	0.396	0.382 0.36 0.35 0.32
uniqtag	1.0	1
varsim	0.8.4	1
vcf2phylip	2.3	1
velvet	1.2.10	8	1.2.107	1.1.07~nozlibcopy 1.0.18
velvetoptimiser	2.2.6	4	2.2.63	2.2.5
verticalize	1.0.1	3	1.0.1		r9.57f8c91
virulign	1.0.2	2	1.0.2
vmatch	2.3.1	3	2.3.1	2.3.0
webin-cli	1.8.11	1
wise2	2.4.1	10	2.4.15	2.4.0_alpha 2.2.05
wtdbg2∗	2.5	4	2.52	2.3
xmatchview	1.2.5	1
xssp∗	3.0.10	1

Legend:

• Spread means how many repository families (e.g. all Debian versions as well as Ubuntu and other derivatives make a single family) contain this package.
• newest^#repos - newest known version. The number shows how many repository families have this version.
• devel - newest known devel (or unstable) version. There may be both devel and newest versions for a given package.
• unique - package is only present in a single repository family, there are no other sources to compare it against, so although it's latest version known to repology, is not really reliable.
• outdated - outdated version which requires updating.
• legacy - outdated version when a newer version is present. This is assumed to be legacy version preserved for e.g. compatibility.
• rolling - package is fetched from always latest snapshot or VCS master/trunk, so it is always latest and is not a subject for comparison.
• noscheme - the project does not have official versioning scheme, so versions used in repositories which are basically random.
• incorrect - version is known to be incorrect (e.g. version not officially released yet, or lacking alpha/beta/rc qualifier).
• untrusted - this source is known to likely supply incorrect versions, so is ignored proactively.
• ignored - version is ignored and excluded from comparison for some other reason (e.g. snapshots).
• vulnerable▲ - version is potentially vulnerable as there are related CVEs.