170 project(s) on this page
Project | Selected | Spr | Newest | Outdated | Ignored |
---|---|---|---|---|---|
abacas | 1.3.1 | 4 | 1.3.13 | ||
abricate | 1.0.1 | 1 | 1.0.1 | HEAD | |
abyss-explorer | 2.1.0 | 1 | |||
adam∗ | 0.34.0 | 2 | 1.1.1 | ||
ale-assemby-likelihood-estimator | 0.0.20180904 | 1 | |||
any2fasta | 0.4.2 | 4 | 0.4.23 | ||
apbspdb2pqr∗ | 1.5 | 1 | |||
arks | 1.0.4 | 1 | |||
art-biostatistics | 20160605 | 1 | |||
ascp∗ | 3.7.7 | 1 | |||
astral-species-tree | 5.7.1 | 4 | 5.7.13 | ||
bam2fastx | 1.3.0 | 1 | |||
bamm-bayesian∗ | 2.5.0 | 3 | 2.5.02 | ||
barrnap | 0.9 | 5 | 0.94 | 0.8 0.7 | |
bazam | 1.0.1 | 1 | |||
berokka | 0.2.3 | 1 | |||
biobloomtools | 2.3.3 | 1 | |||
biomake | 0.1.5 | 1 | |||
bodr | 10 | 13 | 1010 | 9 8 | |
bonsai-taxonomic-analysis | 0.3 | 1 | |||
cannoli∗ | 0.12.0 | 1 | |||
cd-hit∗ | 4.8.1 | 11 | 4.8.19 | 4.6.8 4.6.6 4.6.4 4.6.1-2012-08-27 | |
circos∗ | 0.69-9 | 7 | 0.69.92 0.69-92 0.69_9 | 0.69.6 0.69 0.64 0.49 | |
clipper4coot∗ | 2.1.20180802 | 1 | |||
clustal-omega∗ | 1.2.4 | 12 | 1.2.410 | 1.2.2 1.2.1 | |
clustalw∗ | 2.1 | 15 | 2.112 | 1.832 | 2.1+lgpl 2.1+lgpl |
cluster-picker | 1.2.5 | 1 | |||
consel | 0.20 | 3 | 0.1 | 2011.05.12 | |
crumble | 0.8.3 | 1 | |||
das-tool | 1.1.2 | 1 | |||
dehomopolymerate | 0.4.0 | 1 | |||
discovardenovo∗ | 52488 | 2 | 52488 | ||
disty | 0.1.0 | 2 | 0.1.0 | ||
dsh-bio∗ | 2.0.3 | 1 | |||
edirect∗ | 13.8 | 3 | 13.3.20200128 | 24.2.20250612 | |
elph | 1.0.1 | 5 | 1.0.14 | ||
ema | 0.6.2 | 1 | |||
emboss∗ | 6.6.0 | 15 | 6.6.012 | 6.5.7 6.4.0 6.0.1 | |
epa-ng | 0.3.8 | 1 | |||
exonerate | 2.4.0 | 11 | 2.4.09 | 2.2.02 | |
express-rna-seq | 1.5.3 | 3 | 1.5.32 | ||
faqcs | 2.10 | 1 | |||
fastq-pair | 1.0 | 3 | 1.02 | ||
fasttree | 2.1.11 | 9 | 2.1.117 | 2.1.102 2.1.9 2.1.8 2.1.7 | |
fastuniq | 1.1 | 2 | 1.1 | ||
fermi-lite | 0.1 | 4 | 0.1 | 0.1.r13.g85f159e | 0.1.13 0.1+git20221215.85f159e 0.1+git20190320.b499514 |
figtree | 1.4.4 | 7 | 1.4.45 | 1.4.3 1.4.2 1.4 | 1.4.4.14 |
flash-seq∗ | 1.2.11 | 6 | 1.2.115 | ||
flowcraft | 1.4.1 | 1 | |||
fraggenescan | 1.31 | 2 | 1.31 | ||
Project | Selected | Spr | Newest | Outdated | Ignored |
fwdpp | 0.8.1 | 1 | |||
gappa-phylogenetic-analysis∗ | 0.6.1 | 1 | |||
gblocks | 0.91b | 4 | 0.91b3 | ||
genome-painter | 0.0.8 | 2 | 0.0.8 | ||
gepard | 1.40 | 1 | |||
gfakluge | 1.1.2 | 1 | |||
gfalint | 1.0.0 | 1 | |||
gfaview | 0.0.53 | 1 | |||
ghostz | 1.0.2 | 3 | 1.0.22 | ||
gmap-gsnap∗ | 2019-09-12 | 3 | 2019.03.15 | 2023-07-20 | |
groot | 1.1.2 | 2 | 1.0.2 1.0.0.r85.gca6c8f2 | ||
gzstream | 1.5 | 5 | 1.54 | 1.5+git20171107.9a20658 1.5+git20171107.9a20658 | |
harvest-tools | 1.3 | 2 | 1.3 | ||
hh-suite∗ | 3.3.0 | 4 | 3.3.03 | ||
hisat2 | 2.2.1 | 9 | 2.2.18 | 2.1.0 | 2.2.1.r55.g5086938 |
hssp∗ | 3.1.5 | 3 | 3.1.52 | ||
humann2∗ | 0.11.1 | 1 | |||
idba | 1.1.3 | 5 | 1.1.34 | 1.1.2 | 9999 |
indel-seq-gen | 2.1.03 | 2 | 2.1.03 | ||
indelible | 1.03 | 3 | 1.032 | ||
ispcr | 33 | 1 | |||
jspecies | 1.2.1 | 1 | |||
k8 | 0.2.5 | 2 | 0.2.4 | ||
kat | 2.4.2 | 1 | |||
kounta | 0.2.3 | 1 | |||
kr-mutation-distances | 2.0.2 | 1 | |||
kraken | 1.1.1 | 6 | 1.1.13 | 1.1 0.10.5~beta 0.1 | r70.2c5f7ce 32.368a837 |
legsta | 0.5.1 | 1 | |||
libgff | 2.0.0 | 7 | 2.0.06 | 1.0 | |
libsequence | 1.9.8 | 2 | 1.9.8 | ||
light-assembler | 1.0.0 | 1 | |||
links-scaffolder | 1.8.7 | 1 | |||
lrsim | 1.0 | 1 | |||
lsd2 | 1.7.1 | 1 | |||
magic-blast∗ | 1.3.0 | 1 | |||
maxbin2 | 2.2.7 | 1 | |||
metabat | 2.15 | 4 | 2.153 | ||
mhap | 2.1.3 | 3 | 2.1.32 | 2.1.1 1.6 | |
mican | 2019.11.27 | 2 | 2019.11.27 | ||
minced | 0.4.2 | 3 | 0.4.2 | 0.3.2 | |
miniasm | 0.3 | 7 | 0.35 | 0.2 | 2018-3-30 |
minimap∗ | 0.2 | 3 | 0.2 | 0-unstable-2024-11-23 | |
mir-prefer | 0.24 | 1 | |||
mp-est∗ | 2.0 | 1 | |||
mreps | 2.6.01 | 3 | 2.6.012 | ||
newick-utils | 1.6 | 3 | 1.6 | 1.6-1.da121155 | |
nextgenmap | 0.5.5 | 1 | |||
ngmaster∗ | 0.5.6 | 1 | |||
ngmerge | 0.3 | 2 | 0.3 | ||
nonpareil-metagenomic-coverage | 3.3.4 | 1 | |||
Project | Selected | Spr | Newest | Outdated | Ignored |
ntcard | 1.2.2 | 3 | 1.2.22 | 9999 | |
ntedit | 1.3.4 | 1 | |||
ntjoin | 1.0.6 | 1 | |||
nullarbor | 2.0.20191013 | 1 | |||
nxtrim | 0.4.3 | 3 | 0.4.32 | ||
oases | 0.2.08 | 1 | |||
oma-orthologs | 2.4.2 | 1 | |||
orfm | 0.7.1 | 3 | 0.7.12 | ||
pandaseq | 2.11 | 3 | 2.112 | ||
panito | 0.0.1 | 1 | |||
pathvisio | 3.3.0 | 2 | 3.3.0 | ||
peat | 1.2.5 | 1 | |||
phlawd | 3.4b | 1 | |||
phylobayes | 4.1e | 2 | 4.1e | 4.1c | |
porechop | 0.2.4 | 3 | 0.2.4 | 0.2.3-1.289d5dc | |
prank∗ | 170427 | 7 | 1704274 | 140603 0.0.170427 0.0.150803 0.0.140110 | |
prokka | 1.14.6 | 3 | 1.14.62 | 1.14.5 | |
psmc | 0.6.5 | 3 | 0.6.5 | 2016-1-21 | |
pullseq | 1.0.2 | 2 | 1.0.2 | ||
quickmerge | 0.3 | 1 | |||
quicktree | 2.5 | 3 | 2.52 | ||
r2r | 1.0.6 | 1 | |||
r8s | 1.81 | 1 | |||
rapidnj | 2.3.2 | 1 | |||
raster3d | 3.0-7 | 5 | 3.0.7 3.0-7 | 3.0.6 3.0-4 3.0-3 3.0-2 3.0 | |
raven-assembler | 0.0.0 | 1 | |||
rcorrector | 1.0.4 | 2 | 1.0.4 | ||
realphy | 1.12 | 1 | |||
repaq | 0.2.0 | 1 | |||
rmblast | 2.2.28 | 1 | |||
roary | 3.13.0 | 4 | 3.13.02 | 3.12.02 3.6.0 | |
salmid | 0.1.23 | 2 | 0.1.23 | ||
samblaster | 0.1.26 | 6 | 0.1.265 | 0.1.24 | |
samclip | 0.4.0 | 3 | 0.4.02 | ||
seq-gen | 1.3.4 | 4 | 1.3.42 | 1.3.32 | |
sga | 0.10.15 | 4 | 0.10.152 | 9999 | |
shovill | 1.1.0 | 2 | 1.1.0 | ||
sibelia | 3.0.7 | 2 | 3.0.7 | ||
simulate-pcr | 1.2 | 1 | |||
ska-split-kmer | 1.0 | 3 | 1.02 | ||
skesa | 2.4.0 | 3 | 2.4.02 | 2.3.0 | |
smalt | 0.7.6 | 5 | 0.7.64 | ||
snippy | 4.6.0 | 3 | 4.6.02 | ||
snoscan | 0.9.1 | 1 | |||
snp-dists | 0.7.0 | 2 | 0.7.0 | ||
snp-sites | 2.5.1 | 4 | 2.5.13 | 2.4.1 2.3.3 2.1.3 1.5.0 | |
solexaqa | 3.1.7.1 | 2 | 3.1.7.1 | ||
souporcell | 2.0 | 1 | |||
squeakr | 0.7 | 2 | 0.7 | ||
ssm∗ | 1.4 | 6 | 1.4.02 1.42 | 1.3 1.1 1.0.0 1.0 | |
Project | Selected | Spr | Newest | Outdated | Ignored |
swipe | 2.1.0 | 2 | 2.1.0 | ||
tbl2asn | 25.8 | 2 | 2022-04-26 | ||
tigmint | 1.2.2 | 1 | |||
transabyss | 2.0.1 | 2 | 1.5.5 | ||
treepl | 2018.05.22 | 1 | |||
trimadap | 0.1.11 | 2 | 0.1.4 | ||
trimmomatic | 0.39 | 9 | 0.397 | 0.382 0.36 0.35 0.32 | |
uniqtag | 1.0 | 1 | |||
varsim | 0.8.4 | 1 | |||
vcf2phylip | 2.3 | 1 | |||
velvet | 1.2.10 | 8 | 1.2.107 | ||
velvetoptimiser | 2.2.6 | 4 | 2.2.63 | 2.2.5 | |
verticalize | 1.0.1 | 2 | 1.0.1 | ||
virulign | 1.0.2 | 3 | 1.0.22 | ||
vmatch | 2.3.1 | 3 | 2.3.1 | 2.3.0 | |
webin-cli | 1.8.11 | 1 | |||
wise2 | 2.4.1 | 12 | 2.4.110 | 2.4.0_alpha 2.2.02 | |
wtdbg2 | 2.5 | 5 | 2.54 | ||
xmatchview | 1.2.5 | 1 | |||
xssp∗ | 3.0.10 | 1 |
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