200 project(s) on this page
| Metapackage | In Homebrew tap Brewsci/bio | Spread | Newest | Outdated | Ignored |
|---|---|---|---|---|---|
| abacas | 1.3.1 | 2 | 1.3.1 | ||
| abricate | 0.8.10 | 1 | |||
| adam | 0.26.0 | 1 | |||
| ale-assemby-likelihood-estimator | 0.0.20180904 | 1 | |||
| andi | 0.12 | 3 | 0.122 | 0.11 0.10 0.9.6.1 | |
| aragorn | 1.2.38 | 3 | 1.2.382 | 1.2.36 | |
| arcs | 1.0.5 | 1 | |||
| art | 20160605 | 3 | 2.0 0.9.01 | ||
| artemis | 17.0.1 | 7 | 17.0.12 | 16.0.17 16.0.0 1.4.03 | 17.0.1.11 |
| ascp∗ | 3.7.7 | 1 | |||
| astral-species-tree | 5.5.6 | 1 | |||
| bali-phy | 3.4.1 | 3 | 3.4.1 | 3.4 3.3 3.1.2 3.0.3 | |
| bamm-bayesian | 2.5.0 | 1 | |||
| bandage | 0.8.1 | 2 | 0.8.1 | ||
| barrnap | 0.9 | 2 | 0.9 | 0.8 0.7 | |
| bazam | 1.0.1 | 1 | |||
| bcalm | 2.2.0 | 1 | |||
| berokka | 0.2 | 1 | |||
| bfc | r181 | 1 | |||
| biobloomtools | 2.3.2 | 1 | |||
| biomake | 0.1.5 | 1 | |||
| bioperl∗ | 1.007002 | 5 | 1.007002 | 1.7.4 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 | 9999 |
| blast-legacy∗ | 2.2.26 | 1 | |||
| blat | 36 | 3 | 35 34 | ||
| bonsai | 0.3 | 2 | 1.3.9 | ||
| bowtie∗ | 1.2.2_p1 | 8 | 1.2.2_p1 | 1.2.22 1.2.0 1.1.23 1.1.1 1.0.1 1.0.02 0.12.72 | v2.2.9.r9.g9c90266 |
| bracken | 2.2 | 1 | |||
| breseq | 0.33.0 | 1 | |||
| busco | 3.0.2 | 2 | 3.0.0 | ||
| cannoli | 0.3.0 | 1 | |||
| canu | 1.8 | 4 | 1.83 | 1.7.1 1.7 1.6 | |
| circlator | 1.5.5 | 2 | 1.5.5 | 1.5.1 1.4.1 1.4.0 | |
| circos∗ | 0.69-6 | 5 | 0.69.6 | 0.69.5 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49 | |
| clonalframeml | 1.11 | 2 | 1.11 | ||
| clustal-omega∗ | 1.2.4 | 8 | 1.2.47 | 1.2.1 | |
| clustalw∗ | 2.1 | 10 | 2.19 | 1.83 | |
| consel | 0.20 | 1 | |||
| crumble | 0.8.1 | 1 | |||
| das-tool | 1.1.1 | 1 | |||
| dida | 1.0.1 | 1 | |||
| disty | 0.1.0 | 1 | |||
| dsh-bio | 1.1 | 1 | |||
| dwgsim | 0.1.12 | 3 | 0.1.122 | 0.1.11 | r159.39a1bbb |
| e-mem | 1.0.1 | 2 | 1.0.1 | 1.0.0 | |
| easel∗ | 0.43 | 1 | |||
| elph | 1.0.1 | 5 | 1.0.14 | ||
| ema | 0.6.2 | 1 | |||
| emboss∗ | 6.6.0 | 12 | 6.6.08 | 6.5.7 6.4.0 6.3.1 6.0.1 | |
| epa-ng | 0.3.5 | 1 | |||
| exabayes | 1.5 | 2 | 1.4.1 | ||
| Metapackage | In Homebrew tap Brewsci/bio | Spread | Newest | Outdated | Ignored |
| express-rna-seq | 1.5.2 | 3 | 1.5.12 | ||
| fasta | 36.3.8g | 5 | 36.3.8g2 | 36.3.8 36.3.5e 21.1.1 | |
| fastani | 1.1 | 1 | |||
| fasttree | 2.1.10 | 6 | 2.1.104 | 2.1.9 2.1.82 2.1.7 2.1.4 | |
| fastuniq | 1.1 | 1 | |||
| fermi-lite | 0.1 | 2 | 0.1 | ||
| filtlong | 0.2.0 | 2 | 0.2.0 | ||
| flash-seq | 1.2.11 | 1 | |||
| flowcraft | 1.4.1 | 1 | |||
| flye | 2.3.7 | 1 | |||
| fraggenescan | 1.31 | 2 | 1.30 | ||
| freebayes | 1.2.0 | 5 | 1.2.03 | 1.1.0 1.0.2 | 1.0.1.r0.gefe685d 2017-08-23 |
| fwdpp | 0.6.1 | 1 | |||
| gatk | 4.0.11.0 | 4 | 4.0.11.0 | 4.0.7.0 4.0.6.0 2.4 | 9999 |
| gblocks | 0.91b | 2 | 0.91b | ||
| genome-painter | 0.0.6 | 1 | |||
| gepard | 1.40 | 1 | |||
| gfakluge | 1.1.0 | 1 | |||
| gfalint | 1.0.0 | 1 | |||
| gfaview | 0.0.53 | 1 | |||
| gmap-gsnap∗ | 2018-07-04 | 2 | 2018.07.04 | ||
| gzstream | 1.5 | 5 | 1.54 | ||
| harvest-tools | 1.3 | 2 | 1.3 | 1.2 | |
| hisat2 | 2.1.0 | 7 | 2.1.03 | 2.0.52 | 2.1.0.232 |
| humann2 | 0.11.1 | 1 | |||
| idba | 1.1.3 | 3 | 1.1.32 | 1.1.2 | |
| indel-seq-gen | 2.1.03 | 1 | |||
| indelible | 1.03 | 2 | 1.03 | ||
| infernal∗ | 1.1.2 | 6 | 1.1.24 | 1.1.1 1.1rc4 1.0.22 | |
| ispcr | 33 | 1 | |||
| jellyfish-k-mer | 2.2.10 | 6 | 2.2.103 | 2.2.8 2.2.62 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2 | |
| jspecies | 1.2.1 | 1 | |||
| k8 | 0.2.4 | 1 | |||
| kaiju | 1.6.3 | 2 | 1.6.3 | ||
| kat | 2.4.1 | 1 | |||
| kent-tools∗ | 367 | 1 | |||
| kma | 0.14.3 | 1 | |||
| kmc | 3.1.0 | 3 | 2.3 2.0 | ||
| kmergenie | 1.7048 | 1 | |||
| kr-mutation-distances | 2.0.2 | 1 | |||
| kraken∗ | 1.1 | 5 | 1.13 | 0.10.5beta 0.1 | r70.2c5f7ce 32.368a837 |
| kraken2 | 2.0.7 | 1 | |||
| lastz | 1.04.00 | 2 | 1.04.00 | ||
| legsta | 0.3.2 | 1 | |||
| libdivsufsort | 2.0.1 | 8 | 2.0.17 | 9999 | |
| libmuscle∗ | 3.7 | 3 | 3.72 | ||
| libsequence | 1.9.3 | 1 | |||
| light-assembler | 1.0.0 | 1 | |||
| lighter | 1.1.1 | 1 | |||
| links-scaffolder | 1.8.6 | 1 | |||
| Metapackage | In Homebrew tap Brewsci/bio | Spread | Newest | Outdated | Ignored |
| lofreq | 2.1.3.1 | 1 | |||
| lrsim | 1.0 | 1 | |||
| magic-blast | 1.3.0 | 1 | |||
| maker | 2.31.10 | 1 | |||
| mash-genome-distance | 2.1 | 3 | 2.12 | 2.0 1.1.1 | |
| maxbin2 | 2.2.5 | 1 | |||
| mcl | 14-137 | 8 | 14.1372 14_137 14-137 | 14 12.135 12 11 09_308 08.312 1.008.09.149 | |
| megahit | 1.1.3 | 1 | |||
| meme-motif-discovery∗ | 5.0.4 | 4 | 5.0.4 | 4.12.0 4.11.2_p2 | |
| metaphlan | 1.7.8 | 1 | |||
| mhap | 2.1.3 | 2 | 2.1.3 | 2.1.1 1.6 | |
| minia | 3.2.0 | 2 | 3.2.0 | 1.6906 1.6088 1.6067 | |
| miniasm | 0.3 | 2 | 0.3 | 0.2 | |
| minimap | 0.2 | 2 | 0.2 | ||
| minimap2 | 2.16 | 4 | 2.152 2.102 | ||
| mir-prefer | 0.24 | 1 | |||
| mlst | 2.16.1 | 1 | |||
| mmtf-cpp∗ | 1.0.0 | 4 | 1.0.03 | ||
| mosdepth | 0.2.3 | 3 | 0.2.32 | ||
| mp-est | 2.0 | 1 | |||
| mpboot | 1.1.0 | 1 | |||
| mrbayes | 3.2.6 | 7 | 3.2.63 | 3.2.3 3.2.2 3.1.24 | |
| mummer | 3.23 | 6 | 3.233 | 3.22 3.20 | 4.0.0.b2.2 |
| muscle-sequence-alignment | 3.8.1551 | 8 | 3.8.15513 | 3.8.315 | |
| newick-utils | 1.6 | 4 | 1.62 | 1.5.0 | |
| nextflow | 0.32.0 | 2 | 0.32.0 | ||
| nextgenmap | 0.5.5 | 1 | |||
| ngmaster | 0.5.5 | 1 | |||
| nonpareil-metagenomic-coverage | 3.3.1 | 1 | |||
| ntcard | 1.1.0 | 1 | |||
| nxrepair | 0.13 | 1 | |||
| nxtrim | 0.4.3 | 1 | |||
| oases | 0.2.08 | 1 | |||
| oma | 2.3.1 | 1 | |||
| orfm | 0.7.1 | 2 | 0.7.1 | ||
| panito | 0.0.1 | 1 | |||
| parasail | 2.2.0 | 1 | |||
| parsnp∗ | 1.2 | 2 | 1.2 | ||
| pathvisio | 3.3.0 | 2 | 3.2.4 | ||
| phlawd | 3.4b | 1 | |||
| phylip | 3.697 | 8 | 3.6973 | 3.6963 3.695 3.694 | |
| phyml∗ | 3.3.20180621 | 6 | 3.3.201806213 | 3.3.20180214 3.3.201705302 3.2.0 2.4.5 | r121.ab59039 20120412 20110919 |
| phyx | 0.999 | 2 | 0.999 | ||
| portcullis | 1.1.0 | 1 | |||
| prank∗ | 170427 | 4 | 150803 140603 0.0.170427 0.0.150803 0.0.140110 | ||
| pullseq | 1.0.2 | 1 | |||
| pymol∗ | 2.3.0 | 15 | 2.3.04 | 2.2.05 2.1.1 2.1.03 1.9.0.0.svn4184 1.8.6.04 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 | |
| quast | 5.0.2 | 1 | |||
| quickmerge | 0.2 | 1 | |||
| quicktree | 2.4 | 1 | |||
| Metapackage | In Homebrew tap Brewsci/bio | Spread | Newest | Outdated | Ignored |
| quip | 1.1.8 | 1 | |||
| r8s | 1.81 | 2 | 1.80 | ||
| rapidnj | 2.3.2 | 1 | |||
| raxml∗ | 8.2.12 | 7 | 8.2.124 | 8.2.11 8.2.10 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6 | |
| raxml-ng∗ | 0.7.0 | 1 | |||
| rcorrector | 1.0.3 | 1 | |||
| realphy | 1.12 | 1 | |||
| repaq | 0.2.0 | 1 | |||
| rmblast | 2.2.28 | 3 | 2.2.28 | 1.2 | |
| rtg-tools | 3.9 | 2 | 3.8.4 | ||
| sambamba | 0.6.8 | 4 | 0.6.82 | 0.6.7 | |
| samblaster | 0.1.24 | 2 | 0.1.24 | ||
| samclip | 0.2 | 1 | |||
| sdsl-lite | 2.1.1 | 4 | 2.1.12 | 2.0.3 v2.1.1.r132.gddb0fbbc | |
| seq-gen | 1.3.4 | 2 | 1.3.4 | 1.3.3 1.3.2 | |
| seqan | 2.4.0 | 9 | 2.4.07 | 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 | 9999 r628.35e4fba r.fcad60a |
| seqkit | 0.10.1 | 2 | 0.9.0 | ||
| sga | 0.10.15 | 3 | 0.10.152 | 0.10.14 | |
| shovill | 1.0.4 | 1 | |||
| simulate-pcr | 1.2 | 1 | |||
| ska-split-kmer | 1.0 | 1 | |||
| skesa | 2.3.0 | 1 | |||
| smalt | 0.7.6 | 2 | 0.7.6 | ||
| snap-gene-prediction | 2013-11-29 | 1 | |||
| snippy | 4.3.2 | 1 | |||
| snoscan | 0.9.1 | 1 | |||
| snp-dists | 0.6 | 1 | |||
| snpeff | 4.3t | 4 | 4.3t2 4_3t | 4.3q | |
| solexaqa | 3.1.7.1 | 1 | |||
| squeakr | 0.5 | 1 | |||
| staden-io-lib∗ | 1.14.11 | 4 | 1.14.11 | 1.14.9 1.14.8 1.14.62 1.13.7 1.13.5 1.12.42 | |
| sumaclust | 1.0.31 | 2 | 1.0.31 | 1.0.20 1.0.10 | |
| swipe | 2.1.0 | 1 | |||
| taxonkit | 0.3.0 | 1 | |||
| tbl2asn | 25.6 | 2 | 24.3 | ||
| tigmint | 1.1.2 | 1 | |||
| transabyss | 2.0.1 | 2 | 1.5.3 | ||
| treepl | 2017.05.23 | 1 | |||
| trf-tandem-repeats-finder∗ | 4.09 | 3 | 4.07b 4.04 | ||
| trimadap | 0.1.11 | 2 | 0.1.3 | ||
| trimal | 1.4.1 | 1 | |||
| trimmomatic | 0.38 | 6 | 0.384 | 0.36 0.352 0.32 | |
| trinityrnaseq | 2.8.3 | 2 | 2.6.6 2.5.1 2.2.0 | ||
| trnascan-se | 2.0.0 | 5 | 2.0.03 | 1.31 1.3.1 | |
| unicycler | 0.4.7 | 2 | 0.4.7 | ||
| unikmer | 0.4.3 | 1 | |||
| uniqtag | 1.0 | 1 | |||
| varscan | 2.4.3 | 3 | 2.4.3 | 2.4.2 2.3.9 2.3.7 | |
| varsim | 0.8.2 | 1 | |||
| velvet | 1.2.10 | 6 | 1.2.105 | 1.1.07 1.0.18 |
Legend: