Projects

200 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 2 1.3.1
abricate 0.8.13 1
abyss-explorer 1.3.4 1
adam 0.27.0 1
ale-assemby-likelihood-estimator 0.0.20180904 1
andi 0.12 3 0.122 0.10 0.9.6.1
any2fasta 0.4.2 1
apbspdb2pqr 1.5 1
aragorn 1.2.38 4 1.2.383 1.2.36
arcs 1.0.6 1
arks 1.0.4 1
art 20160605 3 2.0 0.9.01
artemis 17.0.1 7 17.0.12 16.0.17 16.0.0 1.4.03 17.0.1.11
ascp 3.7.7 1
astral-species-tree 5.5.6 1
bali-phy 3.4.1 3 3.4.1 3.4 3.3 3.1.2 3.0.3
bamm-bayesian 2.5.0 1
bandage 0.8.1 2 0.8.1
barrnap 0.9 2 0.9 0.8 0.7
bazam 1.0.1 1
bcalm 2.2.0 1
beast2 2.5.2 3 2.5.1 2.4.7 2.4.4
berokka 0.2 1
biobloomtools 2.3.2 1
biomake 0.1.5 1
bioperl 1.007002 5 1.007002 1.7.4 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 9999
blast-legacy 2.2.26 1
blat 36 5 35 34 3.2.19 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bonsai 0.3 3 1.3.92
bowtie 1.2.2_p1 9 1.2.2_p1 1.2.22 1.1.24 1.1.1 1.0.1 1.0.02 0.12.72 v2.2.9.r9.g9c90266
bracken 2.2 1
breseq 0.33.0 1
busco 3.0.2 2 3.0.0
bwa-mem2 2.0pre1 1
cannoli 0.3.0 1
canu 1.8 5 1.84 1.7.1 1.7 1.6
cd-hit 4.8.1 9 4.8.12 4.6.82 4.6.62 4.6.52 4.6.42 4.6.1 4.5.7
circlator 1.5.5 2 1.5.5 1.4.1
circos 0.69-6 5 0.69.6 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml 1.11 2 1.11
clustal-omega 1.2.4 9 1.2.48 1.2.1
clustalw 2.1 13 2.111 1.832
consel 0.20 1
crumble 0.8.1 1
cutadapt 2.3 3 2.1 1.14
das-tool 1.1.1 1
dida 1.0.1 1
disty 0.1.0 1
dsh-bio 1.1 1
dwgsim 0.1.12 3 0.1.122 0.1.11 r159.39a1bbb
Project Selected Spr Newest Outdated Ignored
easel 0.43 1
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 13 6.6.09 6.5.7 6.4.0 6.3.1 6.0.1
epa-ng 0.3.5 1
exabayes 1.5 2 1.4.1
express-rna-seq 1.5.2 3 1.5.12
fasta 36.3.8g 5 36.3.8g2 36.3.8 36.3.5e 21.1.1
fastani 1.1 1
fastp 0.20.0 6 0.20.03 0.19.8 0.19.6 0.14.1
fasttree 2.1.10 6 2.1.104 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq 1.1 1
fermi-lite 0.1 2 0.1
figtree 1.4.4 5 1.4.43 1.4.3 1.4.22 1.4 1.3.1
filtlong 0.2.0 2 0.2.0
flash-seq 1.2.11 1
flowcraft 1.4.1 1
flye 2.4.2 1
fraggenescan 1.31 2 1.30
freebayes 1.2.0 5 1.2.03 1.1.0 1.0.1.r0.gefe685d 2017-08-23
fwdpp 0.6.1 1
gatk 4.0.11.0 4 4.0.11.0 4.0.7.0 4.0.6.0 2.4 9999
gblocks 0.91b 2 0.91b
genome-painter 0.0.6 1
gepard 1.40 1
gfakluge 1.1.0 1
gfalint 1.0.0 1
gfaview 0.0.53 1
gzstream 1.5 5 1.54
harvest-tools 1.3 2 1.3
hisat2 2.1.0 7 2.1.03 2.0.52 2.1.0.232
humann2 0.11.1 1
idba 1.1.3 3 1.1.32 1.1.2
indel-seq-gen 2.1.03 1
indelible 1.03 2 1.03
infernal 1.1.2 6 1.1.24 1.1.1 1.1rc4 1.0.22
iqtree 1.6.10 4 1.6.102 1.6.9 1.6.5 1.6.1 1.5.3 1.3.11.1
ispcr 33 1
jellyfish-k-mer 2.2.10 6 2.2.104 2.2.8 2.2.6 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
jspecies 1.2.1 1
k8 0.2.4 1
kaiju 1.7.0 2 1.6.3
kat 2.4.1 1
kent-tools 367 1
kmc 3.1.0 3 2.3 2.0
kmergenie 1.7048 1
kr-mutation-distances 2.0.2 1
kraken 1.1 5 1.13 0.10.5beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.0.8 2 2.0.7beta
lastz 1.04.00 2 1.04.00
Project Selected Spr Newest Outdated Ignored
legsta 0.3.2 1
libdivsufsort 2.0.1 8 2.0.17 9999
libmuscle 3.7 3 3.72
libsequence 1.9.7 1
light-assembler 1.0.0 1
lighter 1.1.1 1
links-scaffolder 1.8.7 1
lofreq 2.1.3.1 1
lrsim 1.0 1
magic-blast 1.3.0 1
maker 2.31.10 1
mash-genome-distance 2.1 3 2.12 2.0 1.1.1
masurca 3.3.2 1
maxbin2 2.2.6 1
mcl 14-137 8 14.1372 14_137 14-137 14 12.135 12 11 09_308 08.312 1.008.09.149
meme-motif-discovery 5.0.4 4 5.0.4 4.12.0 4.11.2_p2
metabat 2.13 3 2.12.1 0.32.4
metaphlan 1.7.8 1
mhap 2.1.3 2 2.1.3 2.1.1 1.6
minia 3.2.1 2 3.2.0 1.6906 1.6088 1.6067
miniasm 0.3 2 0.3 0.2
minimap 0.2 2 0.2
minimap2 2.17 5 2.172 2.152 2.10
mir-prefer 0.24 1
mlst 2.16.1 1
mmtf-cpp 1.0.0 7 1.0.06
mosdepth 0.2.3 3 0.2.32
mp-est 2.0 1
mpboot 1.1.0 1
mrbayes 3.2.7 7 3.2.63 3.2.3 3.2.2 3.1.24
mummer 3.23 6 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 9 3.8.15513 3.8.316
newick-utils 1.6 4 1.62 1.5.0
nextflow 0.32.0 2 0.32.0
nextgenmap 0.5.5 1
ngmaster 0.5.5 1
ngmerge 0.2 1
nonpareil-metagenomic-coverage 3.3.1 1
ntcard 1.1.1 1
ntedit 1.2.1 1
nthits 0.0.1 1
nxrepair 0.13 1
nxtrim 0.4.3 1
oases 0.2.08 1
oma 2.3.1 1
orfm 0.7.1 2 0.7.1
panito 0.0.1 1
parasail 2.4.1 1
parsnp 1.2 2 1.2
pathvisio 3.3.0 2 3.2.4
Project Selected Spr Newest Outdated Ignored
phlawd 3.4b 1
phylip 3.697 8 3.6973 3.6963 3.695 3.694
phyx 0.999 2 0.999
pilon 1.23 2 1.23 1.22
portcullis 1.1.0 1
prank 170427 5 150803 140603 100802 0.0.170427 0.0.150803 0.0.140110
pullseq 1.0.2 1
pymol 2.3.0 16 2.3.09 2.2.03 2.1.1 2.1.03 1.9.0.0.svn4184 1.8.6.02 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 r4456.dc015754
quast 5.0.2 1
quickmerge 0.3 1
quicktree 2.5 1
quip 1.1.8 1
r8s 1.81 2 1.80
racon 1.3.2 2 1.3.2 1.3.1
rapidnj 2.3.2 1
raxml 8.2.12 7 8.2.124 8.2.11 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
raxml-ng 0.9.0 1
rcorrector 1.0.3 1
realphy 1.12 1
repaq 0.2.0 1
rmblast 2.2.28 3 2.2.28 1.2
rtg-tools 3.9 2 3.8.4
sambamba 0.6.8 4 0.6.82 0.6.7
samblaster 0.1.24 2 0.1.24
samclip 0.2 1
sdsl-lite 2.1.1 4 2.1.12 2.0.3 v2.1.1.r132.gddb0fbbc
seq-gen 1.3.4 2 1.3.4 1.3.3 1.3.2
seqan 2.4.0 9 2.4.07 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 9999 r628.35e4fba r.fcad60a
seqkit 0.10.1 2 0.9.0
sga 0.10.15 3 0.10.152
shovill 1.0.4 1
simulate-pcr 1.2 1
ska-split-kmer 1.0 1
skesa 2.3.0 1
smalt 0.7.6 2 0.7.6
snap-gene-prediction 2013-11-29 1
snippy 4.3.8 1
snoscan 0.9.1 1
snp-dists 0.6.3 1
snpeff 4.3t 4 4.3t2 4_3t
solexaqa 3.1.7.1 1
squeakr 0.5 1
stacks 2.4 6 2.42 2.22 2.1 2.0Beta9 2.0Beta8c 1.44 1.35
staden-io-lib 1.14.11 4 1.14.11 1.14.9 1.14.8 1.14.62 1.13.7 1.13.5 1.12.42
subread 1.6.4 3 1.6.3 1.6.2 1.6.02 1.5.1 1.5.0
swipe 2.1.0 1
taxonkit 0.3.0 1
tbl2asn 25.6 2 24.3
tigmint 1.1.2 1
transabyss 2.0.1 2 1.5.3

Legend: