Projects

198 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 3 1.3.12
abricate 1.0.1 1 1.0.1
abyss-explorer 2.1.0 1
ale-assemby-likelihood-estimator 0.0.20180904 1
any2fasta 0.4.2 1
apbspdb2pqr 1.5 1
aragorn 1.2.38 5 1.2.384 1.2.36
arks 1.0.4 1
art 20160605 7 2.0.1 2.0 1.16.2 1.16.1 1.13 1.10.1 0.9.02
ascp 3.7.7 1
astral-species-tree 5.7.1 3 5.7.12
bam2fastx 1.3.0 1
bamm-bayesian 2.5.0 1
barrnap 0.9 4 0.92 0.82 0.7
bazam 1.0.1 1
berokka 0.2.3 1
bifrost 1.0.5 2 1.0.5
biobloomtools 2.3.3 1
biomake 0.1.5 1
bodr 10 14 1011 93 8
bonsai-taxonomic-analysis 0.3 1
bracken 2.6.0 2 1.0.0
breseq 0.35.4 2 0.33.2
bwa-mem2 2.0 3 2.0pre1 r183.d43752d
cannoli 0.12.0 1
cd-hit 4.8.1 11 4.8.18 4.6.82 4.6.62 4.6.4 4.6.1-2012-08-27 4.5.7
circos 0.69-9 7 0.69_9 0.69.9 0.69-9 0.69.6 0.69-6 0.69.4 0.69 0.66 0.64 0.552 0.49
clipper4coot 2.1.20180802 1
clonalframeml 1.12 3 1.122 1.11
clustal-omega 1.2.4 12 1.2.410 1.2.2 1.2.1
clustalw 2.1 15 2.112 1.832 2.1+lgpl 2.1+lgpl
cluster-picker 1.2.5 1
consel 0.20 2 0.1
crumble 0.8.3 1
cutadapt 3.3 4 3.3 2.10 2.1 1.14
das-tool 1.1.2 1
dehomopolymerate 0.4.0 1
discovardenovo 52488 2 52488
disty 0.1.0 2 0.1.0
dsh-bio 2.0.3 1
easel 0.46 1
edirect 13.8 2 13.3.20200128
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 15 6.6.011 6.5.7 6.4.0 6.3.1 6.0.1
epa-ng 0.3.8 1
exonerate 2.4.0 11 2.4.08 2.2.03
express-rna-seq 1.5.3 4 1.5.32 1.5.1
faqcs 2.10 1
fastq-pair 1.0 3 1.02
Project Selected Spr Newest Outdated Ignored
fasttree 2.1.11 7 2.1.113 2.1.104 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq 1.1 1
fermi-lite 0.1 2 0.1 0.1+git20190320.b499514
figtree 1.4.4 6 1.4.44 1.4.32 1.4.2 1.4 1.3.1 1.4.4.14
flash-seq 1.2.11 5 1.2.114
flowcraft 1.4.1 1
fraggenescan 1.31 3 1.31 1.30
fwdpp 0.8.1 1
gappa-phylogenetic-analysis 0.6.1 1
gblocks 0.91b 4 0.91b3
genome-painter 0.0.8 2 0.0.8
gepard 1.40 1
gfakluge 1.1.2 1
gfalint 1.0.0 1
gfaview 0.0.53 1
ghostz 1.0.2 2 1.0.2
gmap-gsnap 2019-09-12 3 2019.03.15 2021-03-08
gzstream 1.5 5 1.54 1.5+git20171107.9a20658
harvest-tools 1.3 2 1.3
hh-suite 3.3.0 1
hisat2 2.2.1 9 2.2.17 2.2.0 2.1.0 2.0.5 2.2.1.r8.g49aa20c
hssp 3.1.5 3 3.1.5 3.0.10
humann2 0.11.1 1
idba 1.1.3 5 1.1.34 1.1.2 9999
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
ispcr 33 1
jellyfish-k-mer 2.3.0 8 2.3.06 2.2.10 2.2.8 2.2.7 2.2.6 2.2.4 2.1.4 1.1.122 1.1.11 1.1.10 1.1.2
jspecies 1.2.1 1
k8 0.2.5 2 0.2.4
kaiju 1.7.4 3 1.6.3 1.6.2
kat 2.4.2 2 2.4.2 9999
kent-tools 401 1
kmergenie 1.7048 3 1.7048 1.7044
kounta 0.2.3 1
kr-mutation-distances 2.0.2 1
kssd 1.1 2 1.1
legsta 0.5.1 1
libccp4 6.5.1 8 6.5.16 6.4.62 6.4.5 6.4.0_rc1 r1861
libdivsufsort 2.0.1 11 2.0.110
libgff 2.0.0 6 2.0.05 1.0
libsequence 1.9.8 2 1.9.8
light-assembler 1.0.0 1
lighter 1.1.2 5 1.1.24 9999
links-scaffolder 1.8.7 1
lrsim 1.0 1
lsd2 1.7.1 1
magic-blast 1.3.0 1
mapcaller 0.9.9.39 2 0.9.9.39
maxbin2 2.2.7 1
Project Selected Spr Newest Outdated Ignored
mcl 14-137 9 14-1373 14_1372 14.1372 12.135 12-135 11-294 08.312 1.008.09.149
megahit 1.2.9 7 1.2.95 1.1.4
metabat 2.15 5 2.153 0.32.4
mhap 2.1.3 2 2.1.3 2.1.1 1.6
mican 2019.11.27 2 2019.11.27
minced 0.4.2 4 0.4.2 0.3.22
miniasm 0.3 6 0.34 0.2 2018-3-30
minimap 0.2 2 0.2
mir-prefer 0.24 1
mlst 2.19.0 1
mmtf-cpp 1.0.0 14 1.0.013
mp-est 2.0 1
mreps 2.6.01 3 2.6.012
mummer 3.23 7 4.0.0rc1 3.233 3.22 3.20 4.0.0.b2.2
nanofilt 2.7.1 2 2.6.0
newick-utils 1.6 4 1.6 1.5.0 1.6-1.da121155
nextgenmap 0.5.5 1
ngmaster 0.5.6 1
ngmerge 0.3 2 0.3
nonpareil-metagenomic-coverage 3.3.4 1
ntcard 1.2.2 3 1.2.22 9999
ntedit 1.3.4 1
nthits 0.0.1 1
ntjoin 1.0.6 1
nullarbor 2.0.20191013 1
nxtrim 0.4.3 3 0.4.32
oases 0.2.08 1
oma 2.4.2 1
orfm 0.7.1 3 0.7.12
pandaseq 2.11 3 2.112
panito 0.0.1 1
pathvisio 3.3.0 2 3.3.0
peat 1.2.5 2 1.0.2
phlawd 3.4b 1
phylobayes 4.1e 2 4.1e
porechop 0.2.4 3 0.2.4 0.2.3-1.289d5dc
prank 170427 6 1704272 140603 100802 0.0.170427 0.0.150803 0.0.140110
prokka 1.14.6 4 1.14.63 1.14.5
psmc 0.6.5 3 0.6.5 2016-1-21
pullseq 1.0.2 2 1.0.2
quast 5.0.2 3 5.0.22
quickmerge 0.3 1
quicktree 2.5 3 2.52
r2r 1.0.6 1
r8s 1.81 1
rapidnj 2.3.2 1
raster3d 3.0-7 5 3.0.7 3.0-7 3.0.6 3.0-4 3.0.3 3.0-3 3.0.2 3.0-2 3.0
rasusa 0.3.0 1
raven-assembler 0.0.0 1
raxml 8.2.12 9 8.2.127 8.2.11 8.2.9 8.2.4 8.1.1 7.2.8 7.2.6
Project Selected Spr Newest Outdated Ignored
rcorrector 1.0.4 2 1.0.4
realphy 1.12 1
repaq 0.2.0 1
rmblast 2.2.28 3 2.2.28 1.2
roary 3.13.0 3 3.13.0 3.12.02 3.8.0 3.6.0
salmid 0.1.23 2 0.1.23
samblaster 0.1.26 6 0.1.263 0.1.243
samclip 0.4.0 3 0.4.02
sepp 4.3.10 2 4.3.10 4.5.1+really4.5.1
seq-gen 1.3.4 3 1.3.4 1.3.32 1.3.2
sga 0.10.15 5 0.10.153 9999
shovill 1.1.0 2 1.1.0
sibelia 3.0.7 2 3.0.7
simulate-pcr 1.2 1
ska-split-kmer 1.0 3 1.02
skesa 2.4.0 3 2.4.02 2.3.0
smalt 0.7.6 4 0.7.63
snippy 4.6.0 2 4.6.0
snoscan 0.9.1 1
snp-dists 0.7.0 2 0.7.0
snp-sites 2.5.1 3 2.5.12 2.4.1 2.3.3 2.3.2 2.1.3 1.5.0
solexaqa 3.1.7.1 2 3.1.7.1
souporcell 2.0 1
squeakr 0.7 2 0.7
ssm 1.4 6 1.43 1.4.02 1.32 1.1 1.0
swipe 2.1.0 2 2.1.0
taxonkit 0.7.2 2 0.13.0 0.12.0
tbl2asn 25.8 3 24.3 2022-04-26
tmalign 20190822 2 2016-05-25
transabyss 2.0.1 2 1.5.5
transdecoder 5.5.0 5 5.5.02 5.4.0 5.0.1 3.0.1 2.0.1
treepl 2018.05.22 1
trimadap 0.1.11 2 0.1.3
trimal 1.4.1 4 1.4.13
trimmomatic 0.39 8 0.396 0.382 0.36 0.35 0.32
uniqtag 1.0 1
varsim 0.8.4 1
vcf2phylip 2.3 1
velvet 1.2.10 8 1.2.107 1.1.07~nozlibcopy 1.0.18
velvetoptimiser 2.2.6 4 2.2.63 2.2.5
verticalize 1.0.1 3 1.0.1 r9.57f8c91
virulign 1.0.2 2 1.0.2
vmatch 2.3.1 3 2.3.1 2.3.0
webin-cli 1.8.11 1
wise2 2.4.1 10 2.4.15 2.4.0_alpha 2.2.05
wtdbg2 2.5 4 2.52 2.3
xmatchview 1.2.5 1
xssp 3.0.10 1

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