Projects

170 project(s) on this page

Project	Selected	Spr	Newest	Outdated	Ignored
abacas	1.3.1	4	1.3.13
abricate	1.0.1	1	1.0.1		HEAD
abyss-explorer	2.1.0	1
adam∗	0.34.0	2			1.1.1
ale-assemby-likelihood-estimator	0.0.20180904	1
any2fasta	0.4.2	4	0.4.23
apbspdb2pqr∗	1.5	1
arks	1.0.4	1
art-biostatistics	20160605	1
ascp∗	3.7.7	1
astral-species-tree	5.7.1	4	5.7.13
bam2fastx	1.3.0	1
bamm-bayesian∗	2.5.0	3	2.5.02
barrnap	0.9	5	0.94	0.8 0.7
bazam	1.0.1	1
berokka	0.2.3	1
biobloomtools	2.3.3	1
biomake	0.1.5	1
bodr	10	13	1010	9 8
bonsai-taxonomic-analysis	0.3	1
cannoli∗	0.12.0	1
cd-hit∗	4.8.1	11	4.8.19	4.6.8 4.6.6 4.6.4 4.6.1-2012-08-27
circos∗	0.69-9	7	0.69.92 0.69-92 0.69_9	0.69.6 0.69 0.64 0.49
clipper4coot∗	2.1.20180802	1
clustal-omega∗	1.2.4	12	1.2.410	1.2.2 1.2.1
clustalw∗	2.1	15	2.112	1.832	2.1+lgpl 2.1+lgpl
cluster-picker	1.2.5	1
consel	0.20	3		0.1	2011.05.12
crumble	0.8.3	1
das-tool	1.1.2	1
dehomopolymerate	0.4.0	1
discovardenovo∗	52488	2	52488
disty	0.1.0	2	0.1.0
dsh-bio∗	2.0.3	1
edirect∗	13.8	3		13.3.20200128	24.2.20250612
elph	1.0.1	5	1.0.14
ema	0.6.2	1
emboss∗	6.6.0	15	6.6.012	6.5.7 6.4.0 6.0.1
epa-ng	0.3.8	1
exonerate	2.4.0	11	2.4.09	2.2.02
express-rna-seq	1.5.3	3	1.5.32
faqcs	2.10	1
fastq-pair	1.0	3	1.02
fasttree	2.1.11	9	2.1.117	2.1.102 2.1.9 2.1.8 2.1.7
fastuniq	1.1	2	1.1
fermi-lite	0.1	4	0.1	0.1.r13.g85f159e	0.1.13 0.1+git20221215.85f159e 0.1+git20190320.b499514
figtree	1.4.4	7	1.4.45	1.4.3 1.4.2 1.4	1.4.4.14
flash-seq∗	1.2.11	6	1.2.115
flowcraft	1.4.1	1
fraggenescan	1.31	2	1.31
Project	Selected	Spr	Newest	Outdated	Ignored
fwdpp	0.8.1	1
gappa-phylogenetic-analysis∗	0.6.1	1
gblocks	0.91b	4	0.91b3
genome-painter	0.0.8	2	0.0.8
gepard	1.40	1
gfakluge	1.1.2	1
gfalint	1.0.0	1
gfaview	0.0.53	1
ghostz	1.0.2	3	1.0.22
gmap-gsnap∗	2019-09-12	3		2019.03.15	2023-07-20
groot	1.1.2	2		1.0.2 1.0.0.r85.gca6c8f2
gzstream	1.5	5	1.54		1.5+git20171107.9a20658 1.5+git20171107.9a20658
harvest-tools	1.3	2	1.3
hh-suite∗	3.3.0	4	3.3.03
hisat2	2.2.1	9	2.2.18	2.1.0	2.2.1.r55.g5086938
hssp∗	3.1.5	3	3.1.52
humann2∗	0.11.1	1
idba	1.1.3	5	1.1.34	1.1.2	9999
indel-seq-gen	2.1.03	2	2.1.03
indelible	1.03	3	1.032
ispcr	33	1
jspecies	1.2.1	1
k8	0.2.5	2		0.2.4
kat	2.4.2	1
kounta	0.2.3	1
kr-mutation-distances	2.0.2	1
kraken	1.1.1	6	1.1.13	1.1 0.10.5~beta 0.1	r70.2c5f7ce 32.368a837
legsta	0.5.1	1
libgff	2.0.0	7	2.0.06	1.0
libsequence	1.9.8	2	1.9.8
light-assembler	1.0.0	1
links-scaffolder	1.8.7	1
lrsim	1.0	1
lsd2	1.7.1	1
magic-blast∗	1.3.0	1
maxbin2	2.2.7	1
metabat	2.15	4	2.153
mhap	2.1.3	3	2.1.32	2.1.1 1.6
mican	2019.11.27	2	2019.11.27
minced	0.4.2	3	0.4.2	0.3.2
miniasm	0.3	7	0.35	0.2	2018-3-30
minimap∗	0.2	3	0.2	0-unstable-2024-11-23
mir-prefer	0.24	1
mp-est∗	2.0	1
mreps	2.6.01	3	2.6.012
newick-utils	1.6	3	1.6		1.6-1.da121155
nextgenmap	0.5.5	1
ngmaster∗	0.5.6	1
ngmerge	0.3	2	0.3
nonpareil-metagenomic-coverage	3.3.4	1
Project	Selected	Spr	Newest	Outdated	Ignored
ntcard	1.2.2	3	1.2.22		9999
ntedit	1.3.4	1
ntjoin	1.0.6	1
nullarbor	2.0.20191013	1
nxtrim	0.4.3	3	0.4.32
oases	0.2.08	1
oma-orthologs	2.4.2	1
orfm	0.7.1	3	0.7.12
pandaseq	2.11	3	2.112
panito	0.0.1	1
pathvisio	3.3.0	2	3.3.0
peat	1.2.5	1
phlawd	3.4b	1
phylobayes	4.1e	2	4.1e	4.1c
porechop	0.2.4	3	0.2.4	0.2.3-1.289d5dc
prank∗	170427	7	1704274	140603 0.0.170427 0.0.150803 0.0.140110
prokka	1.14.6	3	1.14.62	1.14.5
psmc	0.6.5	3	0.6.5		2016-1-21
pullseq	1.0.2	2	1.0.2
quickmerge	0.3	1
quicktree	2.5	3	2.52
r2r	1.0.6	1
r8s	1.81	1
rapidnj	2.3.2	1
raster3d	3.0-7	5	3.0.7 3.0-7	3.0.6 3.0-4 3.0-3 3.0-2 3.0
raven-assembler	0.0.0	1
rcorrector	1.0.4	2	1.0.4
realphy	1.12	1
repaq	0.2.0	1
rmblast	2.2.28	1
roary	3.13.0	4	3.13.02	3.12.02 3.6.0
salmid	0.1.23	2	0.1.23
samblaster	0.1.26	6	0.1.265	0.1.24
samclip	0.4.0	3	0.4.02
seq-gen	1.3.4	4	1.3.42	1.3.32
sga	0.10.15	4	0.10.152		9999
shovill	1.1.0	2	1.1.0
sibelia	3.0.7	2	3.0.7
simulate-pcr	1.2	1
ska-split-kmer	1.0	3	1.02
skesa	2.4.0	3	2.4.02	2.3.0
smalt	0.7.6	5	0.7.64
snippy	4.6.0	3	4.6.02
snoscan	0.9.1	1
snp-dists	0.7.0	2	0.7.0
snp-sites	2.5.1	4	2.5.13	2.4.1 2.3.3 2.1.3 1.5.0
solexaqa	3.1.7.1	2	3.1.7.1
souporcell	2.0	1
squeakr	0.7	2	0.7
ssm∗	1.4	6	1.4.02 1.42	1.3 1.1 1.0.0 1.0
Project	Selected	Spr	Newest	Outdated	Ignored
swipe	2.1.0	2	2.1.0
tbl2asn	25.8	2			2022-04-26
tigmint	1.2.2	1
transabyss	2.0.1	2		1.5.5
treepl	2018.05.22	1
trimadap	0.1.11	2		0.1.4
trimmomatic	0.39	9	0.397	0.382 0.36 0.35 0.32
uniqtag	1.0	1
varsim	0.8.4	1
vcf2phylip	2.3	1
velvet	1.2.10	8	1.2.107
velvetoptimiser	2.2.6	4	2.2.63	2.2.5
verticalize	1.0.1	2	1.0.1
virulign	1.0.2	3	1.0.22
vmatch	2.3.1	3	2.3.1	2.3.0
webin-cli	1.8.11	1
wise2	2.4.1	12	2.4.110	2.4.0_alpha 2.2.02
wtdbg2	2.5	5	2.54
xmatchview	1.2.5	1
xssp∗	3.0.10	1

Legend:

• Spread means how many repository families (e.g. all Debian versions as well as Ubuntu and other derivatives make a single family) contain this package.
• newest^#repos - newest known version. The number shows how many repository families have this version.
• devel - newest known devel (or unstable) version. There may be both devel and newest versions for a given package.
• unique - package is only present in a single repository family, there are no other sources to compare it against, so although it's the latest version known to repology, is not really reliable.
• outdated - outdated version which requires updating.
• legacy - outdated version when a newer version is present. This is assumed to be legacy version preserved for e.g. compatibility.
• rolling - package is fetched from always latest snapshot or VCS master/trunk, so it is always latest and is not a subject for comparison.
• noscheme - the project does not have official versioning scheme, so versions used in repositories which are basically random.
• incorrect - version is known to be incorrect (e.g. version not officially released yet, or lacking alpha/beta/rc qualifier).
• untrusted - this source is known to likely supply incorrect versions, so is ignored proactively.
• ignored - version is ignored and excluded from comparison for some other reason (e.g. snapshots).
• vulnerable▲ - version is potentially vulnerable as there are related CVEs.