Projects

170 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 4 1.3.13
abricate 1.0.1 1 1.0.1 HEAD
abyss-explorer 2.1.0 1
adam 0.34.0 2 1.1.1
ale-assemby-likelihood-estimator 0.0.20180904 1
any2fasta 0.4.2 4 0.4.23
apbspdb2pqr 1.5 1
arks 1.0.4 1
art-biostatistics 20160605 1
ascp 3.7.7 1
astral-species-tree 5.7.1 4 5.7.13
bam2fastx 1.3.0 1
bamm-bayesian 2.5.0 3 2.5.02
barrnap 0.9 5 0.94 0.8 0.7
bazam 1.0.1 1
berokka 0.2.3 1
biobloomtools 2.3.3 1
biomake 0.1.5 1
bodr 10 13 1010 9 8
bonsai-taxonomic-analysis 0.3 1
cannoli 0.12.0 1
cd-hit 4.8.1 11 4.8.19 4.6.8 4.6.6 4.6.4 4.6.1-2012-08-27
circos 0.69-9 7 0.69.92 0.69-92 0.69_9 0.69.6 0.69 0.64 0.49
clipper4coot 2.1.20180802 1
clustal-omega 1.2.4 12 1.2.410 1.2.2 1.2.1
clustalw 2.1 15 2.112 1.832 2.1+lgpl 2.1+lgpl
cluster-picker 1.2.5 1
consel 0.20 3 0.1 2011.05.12
crumble 0.8.3 1
das-tool 1.1.2 1
dehomopolymerate 0.4.0 1
discovardenovo 52488 2 52488
disty 0.1.0 2 0.1.0
dsh-bio 2.0.3 1
edirect 13.8 3 13.3.20200128 24.2.20250612
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 15 6.6.012 6.5.7 6.4.0 6.0.1
epa-ng 0.3.8 1
exonerate 2.4.0 11 2.4.09 2.2.02
express-rna-seq 1.5.3 3 1.5.32
faqcs 2.10 1
fastq-pair 1.0 3 1.02
fasttree 2.1.11 9 2.1.117 2.1.102 2.1.9 2.1.8 2.1.7
fastuniq 1.1 2 1.1
fermi-lite 0.1 4 0.1 0.1.r13.g85f159e 0.1.13 0.1+git20221215.85f159e 0.1+git20190320.b499514
figtree 1.4.4 7 1.4.45 1.4.3 1.4.2 1.4 1.4.4.14
flash-seq 1.2.11 6 1.2.115
flowcraft 1.4.1 1
fraggenescan 1.31 2 1.31
Project Selected Spr Newest Outdated Ignored
fwdpp 0.8.1 1
gappa-phylogenetic-analysis 0.6.1 1
gblocks 0.91b 4 0.91b3
genome-painter 0.0.8 2 0.0.8
gepard 1.40 1
gfakluge 1.1.2 1
gfalint 1.0.0 1
gfaview 0.0.53 1
ghostz 1.0.2 3 1.0.22
gmap-gsnap 2019-09-12 3 2019.03.15 2023-07-20
groot 1.1.2 2 1.0.2 1.0.0.r85.gca6c8f2
gzstream 1.5 5 1.54 1.5+git20171107.9a20658 1.5+git20171107.9a20658
harvest-tools 1.3 2 1.3
hh-suite 3.3.0 4 3.3.03
hisat2 2.2.1 9 2.2.18 2.1.0 2.2.1.r55.g5086938
hssp 3.1.5 3 3.1.52
humann2 0.11.1 1
idba 1.1.3 5 1.1.34 1.1.2 9999
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
ispcr 33 1
jspecies 1.2.1 1
k8 0.2.5 2 0.2.4
kat 2.4.2 1
kounta 0.2.3 1
kr-mutation-distances 2.0.2 1
kraken 1.1.1 6 1.1.13 1.1 0.10.5~beta 0.1 r70.2c5f7ce 32.368a837
legsta 0.5.1 1
libgff 2.0.0 7 2.0.06 1.0
libsequence 1.9.8 2 1.9.8
light-assembler 1.0.0 1
links-scaffolder 1.8.7 1
lrsim 1.0 1
lsd2 1.7.1 1
magic-blast 1.3.0 1
maxbin2 2.2.7 1
metabat 2.15 4 2.153
mhap 2.1.3 3 2.1.32 2.1.1 1.6
mican 2019.11.27 2 2019.11.27
minced 0.4.2 3 0.4.2 0.3.2
miniasm 0.3 7 0.35 0.2 2018-3-30
minimap 0.2 3 0.2 0-unstable-2024-11-23
mir-prefer 0.24 1
mp-est 2.0 1
mreps 2.6.01 3 2.6.012
newick-utils 1.6 3 1.6 1.6-1.da121155
nextgenmap 0.5.5 1
ngmaster 0.5.6 1
ngmerge 0.3 2 0.3
nonpareil-metagenomic-coverage 3.3.4 1
Project Selected Spr Newest Outdated Ignored
ntcard 1.2.2 3 1.2.22 9999
ntedit 1.3.4 1
ntjoin 1.0.6 1
nullarbor 2.0.20191013 1
nxtrim 0.4.3 3 0.4.32
oases 0.2.08 1
oma-orthologs 2.4.2 1
orfm 0.7.1 3 0.7.12
pandaseq 2.11 3 2.112
panito 0.0.1 1
pathvisio 3.3.0 2 3.3.0
peat 1.2.5 1
phlawd 3.4b 1
phylobayes 4.1e 2 4.1e 4.1c
porechop 0.2.4 3 0.2.4 0.2.3-1.289d5dc
prank 170427 7 1704274 140603 0.0.170427 0.0.150803 0.0.140110
prokka 1.14.6 3 1.14.62 1.14.5
psmc 0.6.5 3 0.6.5 2016-1-21
pullseq 1.0.2 2 1.0.2
quickmerge 0.3 1
quicktree 2.5 3 2.52
r2r 1.0.6 1
r8s 1.81 1
rapidnj 2.3.2 1
raster3d 3.0-7 5 3.0.7 3.0-7 3.0.6 3.0-4 3.0-3 3.0-2 3.0
raven-assembler 0.0.0 1
rcorrector 1.0.4 2 1.0.4
realphy 1.12 1
repaq 0.2.0 1
rmblast 2.2.28 1
roary 3.13.0 4 3.13.02 3.12.02 3.6.0
salmid 0.1.23 2 0.1.23
samblaster 0.1.26 6 0.1.265 0.1.24
samclip 0.4.0 3 0.4.02
seq-gen 1.3.4 4 1.3.42 1.3.32
sga 0.10.15 4 0.10.152 9999
shovill 1.1.0 2 1.1.0
sibelia 3.0.7 2 3.0.7
simulate-pcr 1.2 1
ska-split-kmer 1.0 3 1.02
skesa 2.4.0 3 2.4.02 2.3.0
smalt 0.7.6 5 0.7.64
snippy 4.6.0 3 4.6.02
snoscan 0.9.1 1
snp-dists 0.7.0 2 0.7.0
snp-sites 2.5.1 4 2.5.13 2.4.1 2.3.3 2.1.3 1.5.0
solexaqa 3.1.7.1 2 3.1.7.1
souporcell 2.0 1
squeakr 0.7 2 0.7
ssm 1.4 6 1.4.02 1.42 1.3 1.1 1.0.0 1.0
Project Selected Spr Newest Outdated Ignored
swipe 2.1.0 2 2.1.0
tbl2asn 25.8 2 2022-04-26
tigmint 1.2.2 1
transabyss 2.0.1 2 1.5.5
treepl 2018.05.22 1
trimadap 0.1.11 2 0.1.4
trimmomatic 0.39 9 0.397 0.382 0.36 0.35 0.32
uniqtag 1.0 1
varsim 0.8.4 1
vcf2phylip 2.3 1
velvet 1.2.10 8 1.2.107
velvetoptimiser 2.2.6 4 2.2.63 2.2.5
verticalize 1.0.1 2 1.0.1
virulign 1.0.2 3 1.0.22
vmatch 2.3.1 3 2.3.1 2.3.0
webin-cli 1.8.11 1
wise2 2.4.1 12 2.4.110 2.4.0_alpha 2.2.02
wtdbg2 2.5 5 2.54
xmatchview 1.2.5 1
xssp 3.0.10 1

Legend: