Projects

172 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 2 1.3.1
andi 0.12 3 0.13 0.12 0.10 0.9.6.1
aragorn 1.2.38 4 1.2.383 1.2.36
art 20160605 3 2.0 0.9.01
artemis-genome-viewer 17.0.1 4 18.1.0 17.0.1.11 17.0.1 16.0.17 16.0.0
bali-phy 3.4.1 3 3.4.12 3.4 3.3 3.1.2
bandage 0.8.1 3 0.8.12
barrnap 0.9 2 0.9 0.8 0.7
bbtools 38.70 2 1.9
bcalm 2.2.0 3 2.2.1 2.2.0.r49.g890ea4a
beast2 2.6.1 3 2.6.0 2.5.1 2.4.7 2.4.4
bfc r181 2 0.2
bioperl 1.007002 6 1.007002 1.7.7 1.7.62 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 9999
blast 2.2.31 3 2.10.02 1.0
blat 36 5 35 34 3.2.22 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bonsai 0.3 3 1.3.92
bowtie 1.2.3 11 1.2.36 1.2.2 1.1.23 1.1.1 1.0.1 1.0.02 0.12.72
busco 4.0.4 2 3.0.0
bwa-mem2 2.0pre1 3 2.0pre1 r83.a06c1af
canu 1.9 5 1.93 1.82 1.7.1 1.7 1.6
cap3 2015-02-11 2 20091029
cd-hit 4.8.1 9 4.8.14 4.6.82 4.6.62 4.6.5 4.6.42 4.6.1 4.5.7
centrifuge 1.0.3 3 1.0.4 1.0.3 1.0.3beta
circlator 1.5.5 2 1.5.6 1.5.5 1.4.1
circos 0.69-9 5 0.69.9 0.69.6 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml 1.12 3 1.12 1.11
clustal-omega 1.2.4 9 1.2.48 1.2.1
clustalw 2.1 13 2.111 1.832
consel 0.20 2 0.1
cutadapt 2.6 3 2.1 1.14
disty 0.1.0 2 0.1.0
dwgsim 0.1.12 3 0.1.122 0.1.11 r159.39a1bbb
e-mem 1.0.1 3 28oct2015 1.0.1
edirect 12.4 2 12.1.20190819
elph 1.0.1 5 1.0.14
emboss 6.6.0 14 6.6.010 6.5.7 6.4.0 6.3.1 6.0.1
exabayes 1.5 2 1.4.1
exonerate 2.4.0 10 2.4.07 2.2.03
express-rna-seq 1.5.3 3 1.5.12
fasta 36.3.8g 6 36.3.8h2 36.3.8g2 36.3.8 36.3.5e 21.1.1
fastp 0.20.0 6 0.20.04 0.19.6 0.14.1
fastq-pair 1.0 2 1.0
fasttree 2.1.11 6 2.1.112 2.1.103 2.1.9 2.1.82 2.1.7 2.1.4
fermi-lite 0.1 2 0.1
figtree 1.4.4 6 1.4.44 1.4.3 1.4.22 1.4 1.3.1
filtlong 0.2.0 3 0.2.0 0.2.0-1.d1bb46d
finch-rs 0.3.0 2 0.3.0
fraggenescan 1.31 2 1.30
freebayes 1.3.2 6 1.3.2 1.3.12 1.2.03 1.1.0 1.0.2-1.3ce827d 1.0.1.r0.gefe685d 2017-08-23
gappa 0.4.0 3 1.3.52 1.3.3 1.3.2 1.3.1
Project Selected Spr Newest Outdated Ignored
gatk 4.1.4.1 5 4.1.4.1 4.0.7.0 4.0.6.0 3.8-1 2.4 9999
gblocks 0.91b 3 0.91b2
gemma 0.98.1 4 0.98.12 0.98 0.97
genome-painter 0.0.6 2 0.0.8
ghostz 1.0.2 2 1.0.2
gmap-gsnap 2019-09-12 2 2019.03.15
groot 0.8.5 2 18.8
gzstream 1.5 5 1.54
harvest-tools 1.3 2 1.3
hisat2 2.1.0 7 2.1.03 2.0.52 2.1.0.232
hmmer 2.4i 15 3.38 3.2.15 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
idba 1.1.3 3 1.1.32 1.1.2
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
infernal 1.1.2 7 1.1.33 1.1.24 1.1.1 1.1rc4 1.0.22
iqtree 1.6.12 4 1.6.123 1.6.11 1.6.9 1.6.5 1.6.1 1.5.3 1.3.11.1
iva 1.0.9 3 1.0.9 1.0.8 0.10.1
jellyfish-k-mer 2.2.10 6 2.3.02 2.2.103 2.2.8 2.2.6 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
kaiju 1.7.0 2 1.6.3
kalign 3.1.1 4 2.032 2.0.4
kma 1.2.21 3 1.2.212 1.2.10a
kmc 3.1.1 3 2.3 2.0
kraken 1.1.1 5 1.1.12 1.12 0.10.5beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.0.8 3 2.0.8beta 2.0.8-beta
kssd 1.0 2 1.0
last 1047 5 10473 983 963 938 921 830 712 490 393 299 230 189
lastz 1.04.00 2 1.04.00
libbigwig 0.4.4 5 0.4.44 0.4.2
libdivsufsort 2.0.1 9 2.0.18 9999
libmuscle 3.7 3 3.72
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
mapcaller 0.9.9.37 2 0.9.9.34
mash-genome-distance 2.2.2 4 2.2.22 2.2 2.12 2.0 1.1.1
mcl 14-137 8 14.1372 14_137 14-137 14 12.135 12 11 09_308 08.312 1.008.09.149
megahit 1.1.4 2 1.2.9 1.1.4
meme-motif-discovery 5.1.0 4 5.1.02 4.11.2_p2
metabat 2.13 3 2.12.1 0.32.4
mhap 2.1.3 2 2.1.3 2.1.1 1.6
minced 0.4.0 2 0.3.2
minia 3.2.1 4 3.2.1 3.2.1git20191130.5 1.6906 1.6088 1.6067 3.2.1.r12.g5b131b9
miniasm 0.3 2 0.3 0.2
minimap 0.2 2 0.2
minimap2 2.17 6 2.174 2.15 2.10
mmtf-cpp 1.0.0 9 1.0.08
mosdepth 0.2.3 3 0.2.6 0.2.3
mothur 1.42.3 5 1.43.02 1.42.1 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mrbayes 3.2.7 7 3.2.7a 3.2.7 3.2.6 3.2.3 3.2.2 3.1.24
mreps 2.6.01 2 2.6.01
mummer 3.23 6 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 10 3.8.15515 3.8.315
Project Selected Spr Newest Outdated Ignored
nanopolish 0.11.1 3 0.11.3 0.11.1-1.6331dc4 0.11.1 0.11.0 0.9.0 0.5.0 0.4.0
newick-utils 1.6 4 1.6 1.5.0 1.6-1.da121155
nextflow 19.04.1 3 20.01.0 19.04.1
orfm 0.7.1 2 0.7.1
paml 4.9i 8 4.9j3 4.9i2 4.9h2 4.9g 4.9e 4.8 4.7 4.5 4.4e 4.4c
pandaseq 2.11 2 2.11
parsnp 1.2 2 1.2.1 1.2
pathvisio 3.3.0 2 3.3.0
peat 1.2.5 2 1.0.2
phylip 3.697 9 3.6973 3.6963 3.6952 3.694
phylobayes 4.1e 2 4.1b
phyml 3.3.20190321 8 3.3.201909095 3.3.20190321 3.3.20180621 3.3.20180214 3.3.20170530 3.2.0 2.4.5 r121.ab59039 201204122 20110919
phyx 1.01 2 1.01 0.999
pilon 1.23 2 1.23 1.22
porechop 0.2.4 3 0.2.4 0.2.3-1.289d5dc
pplacer 1.1.alpha17 2 1.1.alpha19
prank 170427 5 170427 140603 100802 0.0.170427 0.0.150803 0.0.140110
prokka 1.14.6 2 1.14.5 1.13.7 1.13.4
pymol 2.3.0 16 2.3.3 2.3.012 2.2.03 2.1.03 1.9.0.0.svn4184 1.8.6.02 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 r4631.844bf876 r4593.4948dd0f
python:matplotlib 2.2.3 33 3.1.310 3.1.25 3.1.13 3.0.33 3.0.23 2.2.52 2.2.47 2.2.38 2.2.24 2.1.2 2.1.1 2.1.0 2.0.2 2.0.03 1.5.32 1.5.14 1.5.0 1.4.3 1.4.2 1.3.12 1.2.1 1.2.03 1.1.1rc1.git20120423 1.0.0 0.99.1.23 9999 r26679.b9b02f189 3.2.0rc3
quip 1.1.8 2 7.4.0
r8s 1.81 2 1.80
racon 1.4.3 2 1.4.10 1.3.2
raxml 8.2.12 8 8.2.125 8.2.11 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
repeatmasker 4.0.7 4 4.1.0 4.0.5 4.0.1
rmblast 2.2.28 3 2.2.28 1.2
rtg-tools 3.9 2 3.8.4
ruby:rails 1.5.1 20 6.0.2.16 6.0.2 6.0.0 5.2.4.13 5.2.36 5.2.2.12 5.2.22 5.2.13 5.2.0 5.1.73 5.1.6.2 5.1.62 5.1.52 5.1.43 5.0.7.22 5.0.7 5.0.2 4.2.11.14 4.2.102 4.2.7.1 4.2.62 4.2.4 4.1.8 4.1.1 4.0.2 3.2.19 3.2.18 3.2.16 3.2.13 3.2.6 3.0.5 2.3.14.1 2.3.14 2.3.5 1.1.6
salmid 0.1.23 2 0.1.23
salmon 0.9.1 4 0.13.12 0.12.0 0.7.2
sambamba 0.6.8 4 0.7.1 0.7.0 0.6.8 0.6.7
samblaster 0.1.24 3 0.1.242
sdsl-lite 2.1.1 5 2.1.13 2.0.3 v2.1.1.r132.gddb0fbbc
seq-gen 1.3.4 3 1.3.4 1.3.32 1.3.2
seqan 3.0.0 2.4.0 9 3.0.1 2.4.07 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 9999 3.0.0.r465.g4cdd84b2 r.fcad60a
seqkit 0.12.0 2 0.11.0
sga 0.10.15 3 0.10.152
ska-split-kmer 1.0 2 1.0
skesa 2.3.0 2 2.3.0
smalt 0.7.6 2 0.7.6
snp-dists 0.6.3 2 0.6.3
snp-sites 2.5.1 3 2.5.12 2.4.1 2.4.0 2.3.3 2.3.2 2.1.3 1.5.0
snpeff 4.3t 4 4.3t2 4_3t
sortmerna 2.1 4 3.0.3 2.1b 2.1 2.0
stacks 2.41 6 2.412 2.4 2.22 2.1 2.0Beta9 2.0Beta8c 1.44 1.35
staden-io-lib 1.14.11 4 1.14.12 1.14.112 1.14.9 1.14.8 1.14.6 1.13.7 1.13.5 1.12.42
stringtie 1.3.6 7 2.1.12 2.1.0 2.0.4 1.3.62 1.3.4.d 1.2.1
subread 2.0.0 3 2.0.0 1.6.5 1.6.3 1.6.2 1.6.02 1.5.1 1.5.0
sumaclust 1.0.31 3 1.0.342 1.0.31 1.0.20 1.0.10
swipe 2.1.0 2 2.1.0
Project Selected Spr Newest Outdated Ignored
tbl2asn 25.8 2 24.3
transabyss 2.0.1 2 1.5.3
transdecoder 5.5.0 3 5.4.0 5.0.1 3.0.1 2.0.1
trf-tandem-repeats-finder 4.09 3 4.07b 4.04
trimadap 0.1.11 2 0.1.3
trimal 1.4.1 3 1.4.12
trimmomatic 0.39 6 0.393 0.383 0.36 0.35 0.32
trinityrnaseq 2.8.3 2 2.6.6 2.5.1 2.2.0
trnascan-se 2.0.4 5 2.0.52 2.0.32 2.0.0 1.31 1.3.1
unicycler 0.4.7 2 0.4.8 0.4.7
varscan 2.4.3 3 2.4.3 2.4.2 2.3.9 2.3.7
vcflib 1.0.1 4 1.0.0.r1.130 0.0.0-1.5ac0913 v1.0.0.rc1.r127.gac59d4f
velvet 1.2.10 7 1.2.106 1.1.07 1.0.18
velvetoptimiser 2.2.6 2 2.2.6 2.2.5
verticalize 1.0.1 3 1.0.1 r9.57f8c91
viennarna 2.4.14 4 2.4.143
virulign 1.0.2 2 1.0.2
vsearch 2.14.1 6 2.14.2 2.14.12 2.13.6 2.13.42 2.10.4 2.9.1 2.8.0 2.7.1 2.3.4 1.1.3
vt 0.5772 2 0.5772
wiggletools 1.2.3 2 1.2.3
wise2 2.4.1 10 2.4.15 2.4.0_alpha 2.2.05
wish 1.0 2 1.3.r7905f84

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