Projects

147 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 2 1.3.1
andi 0.12 3 0.122 0.10 0.9.6.1
aragorn 1.2.38 4 1.2.383 1.2.36
art 20160605 3 2.0 0.9.01
artemis 17.0.1 7 17.0.12 16.0.17 16.0.0 1.4.03 17.0.1.11
bali-phy 3.4.1 3 3.4.1 3.4 3.3 3.1.2 3.0.3
bandage 0.8.1 2 0.8.1
barrnap 0.9 2 0.9 0.8 0.7
beast2 2.5.2 3 2.5.1 2.4.7 2.4.4
bfc r181 2 0.2
bioperl 1.007002 5 1.007002 1.7.4 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 9999
blat 36 5 35 34 3.2.19 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bonsai 0.3 3 1.3.92
bowtie 1.2.2_p1 9 1.2.2_p1 1.2.22 1.1.24 1.1.1 1.0.1 1.0.02 0.12.72 v2.2.9.r9.g9c90266
busco 3.0.2 2 3.0.0
canu 1.8 5 1.84 1.7.1 1.7 1.6
cap3 2015-02-11 2 20091029
cd-hit 4.8.1 9 4.8.12 4.6.82 4.6.62 4.6.52 4.6.42 4.6.1 4.5.7
centrifuge 1.0.3 3 1.0.4 1.0.3 1.0.3beta
circlator 1.5.5 2 1.5.5 1.4.1
circos 0.69-6 5 0.69.6 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml 1.11 2 1.11
clustal-omega 1.2.4 9 1.2.48 1.2.1
clustalw 2.1 13 2.111 1.832
cutadapt 2.3 3 2.1 1.14
dwgsim 0.1.12 3 0.1.122 0.1.11 r159.39a1bbb
e-mem 1.0.1 3 28oct2015 1.0.1
edirect 9.70 2 10.2
elph 1.0.1 5 1.0.14
emboss 6.6.0 13 6.6.09 6.5.7 6.4.0 6.3.1 6.0.1
exabayes 1.5 2 1.4.1
exonerate 2.2.0 10 2.4.07 2.2.03
express-rna-seq 1.5.2 3 1.5.12
fasta 36.3.8g 5 36.3.8g2 36.3.8 36.3.5e 21.1.1
fastp 0.20.0 6 0.20.03 0.19.8 0.19.6 0.14.1
fasttree 2.1.10 6 2.1.104 2.1.9 2.1.82 2.1.7 2.1.4
fermi-lite 0.1 2 0.1
figtree 1.4.4 5 1.4.43 1.4.3 1.4.22 1.4 1.3.1
filtlong 0.2.0 2 0.2.0
finch-rs 0.1.8 2 0.2.0
fraggenescan 1.31 2 1.30
freebayes 1.2.0 5 1.2.03 1.1.0 1.0.1.r0.gefe685d 2017-08-23
gappa 0.4.0 3 1.3.52 1.3.3 1.3.2 1.3.1 1.2
gatk 4.0.11.0 4 4.0.11.0 4.0.7.0 4.0.6.0 2.4 9999
gblocks 0.91b 2 0.91b
gemma 0.98 4 0.98.12 0.98 0.97
gmap-gsnap 2018-07-04 2 2019.03.15
gzstream 1.5 5 1.54
harvest-tools 1.3 2 1.3
hisat2 2.1.0 7 2.1.03 2.0.52 2.1.0.232
Project Selected Spr Newest Outdated Ignored
hmmer 2.4i 14 3.2.19 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
idba 1.1.3 3 1.1.32 1.1.2
indelible 1.03 2 1.03
infernal 1.1.2 6 1.1.24 1.1.1 1.1rc4 1.0.22
iqtree 1.6.10 4 1.6.102 1.6.9 1.6.5 1.6.1 1.5.3 1.3.11.1
iva 1.0.8 3 1.0.9 1.0.8 0.10.1
jellyfish-k-mer 2.2.10 6 2.2.104 2.2.8 2.2.6 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
kaiju 1.7.0 2 1.6.3
kma 0.14.3 2 1.2.6
kmc 3.1.0 3 2.3 2.0
kraken 1.1 5 1.13 0.10.5beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.0.8 2 2.0.7beta
last 926 4 9632 938 921 830 712 490 393 299 230 189
lastz 1.04.00 2 1.04.00
libbigwig 0.4.2 4 0.4.4 0.4.22
libdivsufsort 2.0.1 8 2.0.17 9999
libmuscle 3.7 3 3.72
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
mash-genome-distance 2.1 3 2.12 2.0 1.1.1
mcl 14-137 8 14.1372 14_137 14-137 14 12.135 12 11 09_308 08.312 1.008.09.149
megahit 1.1.3 2 1.1.4
meme-motif-discovery 5.0.4 4 5.0.4 4.12.0 4.11.2_p2
metabat 2.13 3 2.12.1 0.32.4
mhap 2.1.3 2 2.1.3 2.1.1 1.6
minced 0.3.0 2 0.3.2
minia 3.2.1 2 3.2.0 1.6906 1.6088 1.6067
miniasm 0.3 2 0.3 0.2
minimap 0.2 2 0.2
minimap2 2.17 5 2.172 2.152 2.10
mmtf-cpp 1.0.0 7 1.0.06
mosdepth 0.2.3 3 0.2.32
mothur 1.42.1 5 1.42.22 1.42.1.3 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mrbayes 3.2.7 7 3.2.63 3.2.3 3.2.2 3.1.24
mummer 3.23 6 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 9 3.8.15513 3.8.316
nanopolish 0.10.2 3 0.11.0 0.10.22 0.9.0 0.5.0 0.4.0
newick-utils 1.6 4 1.62 1.5.0
nextflow 0.32.0 2 0.32.0
orfm 0.7.1 2 0.7.1
paml 4.9h 8 4.9i2 4.9h3 4.9g 4.9e 4.8 4.7 4.5 4.4e 4.4c
parsnp 1.2 2 1.2
pathvisio 3.3.0 2 3.2.4
phylip 3.697 8 3.6973 3.6963 3.695 3.694
phyml 3.3.20180621 6 3.3.201903212 3.3.201806212 3.3.20180214 3.3.20170530 3.2.0 2.4.5 r121.ab59039 20120412 20110919
phyx 0.999 2 0.999
pilon 1.23 2 1.23 1.22
porechop 0.2.3 3 0.2.4 0.2.3
pplacer 1.1.alpha17 2 1.1.alpha19
prank 170427 5 150803 140603 100802 0.0.170427 0.0.150803 0.0.140110
prokka 1.13 2 1.13.4
Project Selected Spr Newest Outdated Ignored
pymol 2.3.0 16 2.3.09 2.2.03 2.1.1 2.1.03 1.9.0.0.svn4184 1.8.6.02 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12 r4456.dc015754
python:matplotlib 2.2.3 32 3.1.07 3.0.36 3.0.24 3.0.1 3.0.0 2.2.46 2.2.312 2.2.25 2.2.1 2.2.0 2.1.22 2.1.12 2.1.0 2.0.22 2.0.1 2.0.04 1.5.34 1.5.2 1.5.15 1.5.02 1.4.32 1.4.22 1.4.1 1.4.0 1.3.13 1.3.0 1.2.1 1.2.04 1.1.1rc1.git20120423 1.0.0 0.99.1.23 9999 r26679.b9b02f189
r8s 1.81 2 1.80
racon 1.3.2 2 1.3.2 1.3.1
raxml 8.2.12 7 8.2.124 8.2.11 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
repeatmasker 4.0.7 4 4.0.8 4.0.5 4.0.1
rmblast 2.2.28 3 2.2.28 1.2
rtg-tools 3.9 2 3.8.4
ruby:rails 1.4.2 19 5.2.39 5.2.2.12 5.2.23 5.2.14 5.2.02 5.1.74 5.1.6.2 5.1.62 5.1.53 5.1.44 5.1.3 5.1.2 5.1.1 5.0.7.22 5.0.7 5.0.2 4.2.11.13 4.2.102 4.2.7.1 4.2.62 4.2.4 4.1.8 4.1.1 4.0.2 3.2.19 3.2.18 3.2.16 3.2.13 3.2.6 3.0.5 2.3.14.1 2.3.14 2.3.5 1.1.6 0.0.1
salmid 0.122 2 0.1.23
salmon 0.9.1 4 0.13.12 0.12.0 0.7.2
sambamba 0.6.8 4 0.6.82 0.6.7
samblaster 0.1.24 2 0.1.24
sdsl-lite 2.1.1 4 2.1.12 2.0.3 v2.1.1.r132.gddb0fbbc
seq-gen 1.3.4 2 1.3.4 1.3.3 1.3.2
seqan 2.4.0 9 2.4.07 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 9999 r628.35e4fba r.fcad60a
seqkit 0.10.1 2 0.9.0
sga 0.10.15 3 0.10.152
smalt 0.7.6 2 0.7.6
snp-sites 2.4.0 2 2.4.1 2.4.0 2.3.3 2.3.2 2.1.3 1.5.0
snpeff 4.3t 4 4.3t2 4_3t
sortmerna 2.1 3 2.1b 2.1 2.0
stacks 2.4 6 2.42 2.22 2.1 2.0Beta9 2.0Beta8c 1.44 1.35
staden-io-lib 1.14.11 4 1.14.11 1.14.9 1.14.8 1.14.62 1.13.7 1.13.5 1.12.42
stringtie 1.3.4d 6 1.3.6 1.3.52 1.3.4.d 1.2.1
subread 1.6.4 3 1.6.3 1.6.2 1.6.02 1.5.1 1.5.0
sumaclust 1.0.31 3 1.0.34 1.0.31 1.0.20 1.0.10
tbl2asn 25.6 2 24.3
transabyss 2.0.1 2 1.5.3
transdecoder 5.3.0 3 5.4.0 5.0.1 3.0.1 2.0.1
trf-tandem-repeats-finder 4.09 3 4.07b 4.04
trimadap 0.1.11 2 0.1.3
trimmomatic 0.38 6 0.39 0.383 0.36 0.352 0.32
trinityrnaseq 2.8.3 2 2.6.6 2.5.1 2.2.0
trnascan-se 2.0.0 5 2.0.3 2.0.03 1.31 1.3.1
unicycler 0.4.7 2 0.4.7
varscan 2.4.3 3 2.4.3 2.4.2 2.3.9 2.3.7
vcflib 1.0.0 3 1.0.0.r1.130 v1.0.0.rc1.r127.gac59d4f
velvet 1.2.10 6 1.2.105 1.1.07 1.0.18
velvetoptimiser 2.2.6 2 2.2.6 2.2.5
verticalize 1.0.1 2 r9.57f8c91
viennarna 2.4.3 4 2.4.132 2.4.12
vsearch 2.9.0 6 2.13.43 2.10.4 2.9.1 2.8.0 2.7.1 2.3.4 1.1.3
vt 0.5772 2 0.5772
wiggletools 1.2.3 2 1.2.2
wise2 2.4.1 10 2.4.15 2.4.0_alpha 2.2.05
wish 1.0 2 1.3.r7905f84

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