Projects

200 project(s) on this page

Project	Selected	Spr	Newest	Outdated	Ignored
abacas	1.3.1	2	1.3.1
abricate	0.9.9	1
abyss-explorer	1.3.4	1
adam	0.30.0	1
ale-assemby-likelihood-estimator	0.0.20180904	1
andi	0.12	3	0.13	0.12 0.10 0.9.6.1
any2fasta	0.4.2	1
apbspdb2pqr∗	1.5	1
aragorn	1.2.38	4	1.2.383	1.2.36
arcs	1.1.1	1
arks	1.0.4	1
art	20160605	3		2.0 0.9.01
artemis-genome-viewer	17.0.1	4	18.1.0	17.0.1.11 17.0.1 16.0.17 16.0.0
ascp∗	3.7.7	1
astral-species-tree	5.7.1	1
bali-phy	3.4.1	3	3.4.12	3.4 3.3 3.1.2
bam2fastx	1.3.0	1
bamm-bayesian	2.5.0	1
bandage	0.8.1	3	0.8.12
barrnap	0.9	2	0.9	0.8 0.7
bazam	1.0.1	1
bbtools∗	38.70	2		1.9
bcalm∗	2.2.0	3	2.2.1		2.2.0.r49.g890ea4a
beast2	2.6.1	3		2.6.0 2.5.1 2.4.7 2.4.4
berokka	0.2	1
bfc	r181	2	0.2
biobloomtools	2.3.2	1
biomake	0.1.5	1
bioperl∗	1.007002	6	1.007002	1.7.7 1.7.62 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9	9999
blast∗	2.2.31	3	2.10.02	1.0
blast-legacy∗	2.2.26	1
blat	36	5		35 34 3.2.22 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bonsai	0.3	3			1.3.92
bowtie	1.2.3	11	1.2.36	1.2.2 1.1.23 1.1.1 1.0.1 1.0.02 0.12.72
bracken	2.2	1
breseq	0.33.0	1
busco	4.0.4	2			3.0.0
bwa-mem2	2.0pre1	3	2.0pre1		r83.a06c1af
cannoli	0.8.0	1
canu	1.9	5	1.93	1.82 1.7.1 1.7 1.6
cap3	2015-02-11	2	20091029
cd-hit	4.8.1	9	4.8.14	4.6.82 4.6.62 4.6.5 4.6.42 4.6.1 4.5.7
centrifuge	1.0.3	3	1.0.4	1.0.3 1.0.3beta
circlator	1.5.5	2	1.5.6	1.5.5 1.4.1
circos∗	0.69-9	5	0.69.9	0.69.6 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml	1.12	3	1.12	1.11
clustal-omega∗	1.2.4	9	1.2.48	1.2.1
clustalw∗	2.1	13	2.111	1.832
cluster-picker	1.2.5	1
consel	0.20	2		0.1
Project	Selected	Spr	Newest	Outdated	Ignored
crumble	0.8.1	1
cutadapt∗	2.6	3		2.1 1.14
das-tool	1.1.1	1
dehomopolymerate	0.3	1
dida	1.0.1	1
disty	0.1.0	2	0.1.0
dsh-bio	1.3.1	1
dwgsim	0.1.12	3	0.1.122	0.1.11	r159.39a1bbb
e-mem	1.0.1	3	28oct2015	1.0.1
easel∗	0.43	1
edirect∗	12.4	2		12.1.20190819
elph	1.0.1	5	1.0.14
ema	0.6.2	1
emboss∗	6.6.0	14	6.6.010	6.5.7 6.4.0 6.3.1 6.0.1
epa-ng	0.3.6	1
exabayes	1.5	2		1.4.1
exonerate	2.4.0	10	2.4.07	2.2.03
express-rna-seq	1.5.3	3		1.5.12
fasta	36.3.8g	6	36.3.8h2	36.3.8g2 36.3.8 36.3.5e 21.1.1
fastani	1.1	1
fastp	0.20.0	6	0.20.04	0.19.6 0.14.1
fastq-pair	1.0	2	1.0
fasttree	2.1.11	6	2.1.112	2.1.103 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq	1.1	1
fermi-lite	0.1	2	0.1
figtree	1.4.4	6	1.4.44	1.4.3 1.4.22 1.4 1.3.1
filtlong	0.2.0	3	0.2.0		0.2.0-1.d1bb46d
finch-rs	0.3.0	2	0.3.0
flash-seq	1.2.11	1
flowcraft	1.4.1	1
flye	2.6	1
fraggenescan	1.31	2		1.30
freebayes	1.3.2	6	1.3.2	1.3.12 1.2.03 1.1.0 1.0.2-1.3ce827d	1.0.1.r0.gefe685d 2017-08-23
fwdpp	0.6.1	1
gappa∗	0.4.0	3	1.3.52	1.3.3 1.3.2 1.3.1
gatk	4.1.4.1	5	4.1.4.1	4.0.7.0 4.0.6.0 3.8-1 2.4	9999
gblocks	0.91b	3	0.91b2
gemma	0.98.1	4	0.98.12	0.98 0.97
genome-painter	0.0.6	2	0.0.8
gepard	1.40	1
gfakluge	1.1.0	1
gfalint	1.0.0	1
gfaview	0.0.53	1
ghostz	1.0.2	2	1.0.2
gmap-gsnap∗	2019-09-12	2		2019.03.15
groot∗	0.8.5	2	18.8
gzstream	1.5	5	1.54
harvest-tools	1.3	2	1.3
hisat2	2.1.0	7	2.1.03	2.0.52	2.1.0.232
hmmer	2.4i	15	3.38	3.2.15 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
Project	Selected	Spr	Newest	Outdated	Ignored
humann2	0.11.1	1
idba	1.1.3	3	1.1.32	1.1.2
indel-seq-gen	2.1.03	2	2.1.03
indelible	1.03	3	1.032
infernal∗	1.1.2	7	1.1.33	1.1.24 1.1.1 1.1rc4 1.0.22
iqtree	1.6.12	4	1.6.123	1.6.11 1.6.9 1.6.5 1.6.1 1.5.3 1.3.11.1
ispcr	33	1
iva	1.0.9	3	1.0.9	1.0.8 0.10.1
jellyfish-k-mer	2.2.10	6	2.3.02	2.2.103 2.2.8 2.2.6 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
jspecies	1.2.1	1
k8	0.2.4	1
kaiju	1.7.0	2		1.6.3
kalign	3.1.1	4		2.032 2.0.4
kat	2.4.1	1
kent-tools∗	367	1
kma	1.2.21	3	1.2.212	1.2.10a
kmc	3.1.1	3		2.3 2.0
kmergenie	1.7048	1
kounta	0.2.0	1
kr-mutation-distances	2.0.2	1
kraken∗	1.1.1	5	1.1.12	1.12 0.10.5beta 0.1	r70.2c5f7ce 32.368a837
kraken2	2.0.8	3		2.0.8beta 2.0.8-beta
kssd	1.0	2	1.0
last	1047	5	10473	983 963 938 921 830 712 490 393 299 230 189
lastz	1.04.00	2	1.04.00
legsta	0.3.7	1
libbigwig	0.4.4	5	0.4.44	0.4.2
libdivsufsort	2.0.1	9	2.0.18		9999
libmuscle∗	3.7	3	3.72
libpll	0.3.2	3	1.0.11	0.3.2 0.3.1
libsequence	1.9.7	1
light-assembler	1.0.0	1
lighter	1.1.1	1
links-scaffolder	1.8.7	1
lofreq	2.1.3.1	1
lrsim	1.0	1
lsd2	1.3	1
magic-blast	1.3.0	1
maker	2.31.10	1
mapcaller	0.9.9.37	2		0.9.9.34
mash-genome-distance	2.2.2	4	2.2.22	2.2 2.12 2.0 1.1.1
masurca	3.3.5	1
maxbin2	2.2.6	1
mcl	14-137	8	14.1372 14_137 14-137	14 12.135 12 11 09_308 08.312 1.008.09.149
megahit	1.1.4	2	1.2.9	1.1.4
meme-motif-discovery∗	5.1.0	4	5.1.02	4.11.2_p2
metabat	2.13	3		2.12.1 0.32.4
metaphlan	1.7.8	1
mhap	2.1.3	2	2.1.3	2.1.1 1.6
minced	0.4.0	2		0.3.2
Project	Selected	Spr	Newest	Outdated	Ignored
minia∗	3.2.1	4	3.2.1	3.2.1git20191130.5 1.6906 1.6088 1.6067	3.2.1.r12.g5b131b9
miniasm	0.3	2	0.3	0.2
minigraph	0.2	1
minimap	0.2	2	0.2
minimap2	2.17	6	2.174	2.15 2.10
mir-prefer	0.24	1
mlst	2.18.0	1
mmtf-cpp∗	1.0.0	9	1.0.08
mosdepth	0.2.3	3	0.2.6	0.2.3
mothur	1.42.3	5	1.43.02	1.42.1 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mp-est	2.0	1
mpboot	1.1.0	1
mrbayes	3.2.7	7	3.2.7a	3.2.7 3.2.6 3.2.3 3.2.2 3.1.24
mreps	2.6.01	2	2.6.01
mummer∗	3.23	6	3.233	3.22 3.20	4.0.0.b2.2
muscle-sequence-alignment	3.8.1551	10	3.8.15515	3.8.315
nanofilt	2.5.0	1
nanopolish	0.11.1	3	0.11.3	0.11.1-1.6331dc4 0.11.1 0.11.0 0.9.0 0.5.0 0.4.0
newick-utils	1.6	4	1.6	1.5.0	1.6-1.da121155
nextflow	19.04.1	3	20.01.0	19.04.1
nextgenmap	0.5.5	1
ngmaster	0.5.5	1
ngmerge	0.2	1
nonpareil-metagenomic-coverage	3.3.1	1
ntcard	1.2.1	1
ntedit	1.3.1	1
nthits	0.0.1	1
ntjoin	1.0.1	1
nullarbor	2.0.20191013	1
nxrepair	0.13	1
nxtrim	0.4.3	1
oases	0.2.08	1
oma	2.4.1	1
orfm	0.7.1	2	0.7.1
paml∗	4.9i	8	4.9j3	4.9i2 4.9h2 4.9g 4.9e 4.8 4.7 4.5 4.4e 4.4c
pandaseq	2.11	2	2.11
panito	0.0.1	1
parasail	2.4.1	1
parsnp∗	1.2	2	1.2.1	1.2
pathvisio	3.3.0	2	3.3.0
peat	1.2.5	2		1.0.2
phlawd	3.4b	1
phylip	3.697	9	3.6973	3.6963 3.6952 3.694
phylobayes∗	4.1e	2		4.1b
phyml∗	3.3.20190321	8	3.3.201909095	3.3.20190321 3.3.20180621 3.3.20180214 3.3.20170530 3.2.0 2.4.5	r121.ab59039 201204122 20110919
phyx	1.01	2	1.01	0.999
pilon	1.23	2	1.23	1.22
pirate	1.0.2	1
porechop	0.2.4	3	0.2.4	0.2.3-1.289d5dc
portcullis	1.1.0	1

Legend:

• Spread means how many repository families (e.g. all Debian versions are a single family) contain this package.
• newest^#repos - newest known version. The number shows how many repository families have this version.
• devel - newest known devel (or unstable) version. There may be both devel and newest versions for a given package.
• unique - package is only present in a single repository family, there are no other sources to compare it against, so although it's latest version known to repology, is not really reliable.
• outdated - outdated version which requires updating.
• legacy - outdated version when a newer version is present. This is assumed to be legacy version preserved for e.g. compatibility.
• rolling - package is fetched from always latest snapshot or VCS master/trunk, so it is always latest and is not a subject for comparison.
• noscheme - the project does not have official versioning scheme, so versions used in repositories which are basically random.
• incorrect - version is known to be incorrect (e.g. version not officially released yet, or lacking alpha/beta/rc qualifier).
• untrusted - this source is known to likely supply incorrect versions, so is ignored proactively.
• ignored - version is ignored and excluded from comparison for some other reason (e.g. snapshots).