Projects

200 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 2 1.3.1
abricate 0.9.9 1
abyss-explorer 1.3.4 1
adam 0.30.0 1
ale-assemby-likelihood-estimator 0.0.20180904 1
andi 0.12 3 0.13 0.12 0.10 0.9.6.1
any2fasta 0.4.2 1
apbspdb2pqr 1.5 1
aragorn 1.2.38 4 1.2.383 1.2.36
arcs 1.1.1 1
arks 1.0.4 1
art 20160605 3 2.0 0.9.01
artemis-genome-viewer 17.0.1 4 18.1.0 17.0.1.11 17.0.1 16.0.17 16.0.0
ascp 3.7.7 1
astral-species-tree 5.7.1 1
bali-phy 3.4.1 3 3.4.12 3.4 3.3 3.1.2
bam2fastx 1.3.0 1
bamm-bayesian 2.5.0 1
bandage 0.8.1 3 0.8.12
barrnap 0.9 2 0.9 0.8 0.7
bazam 1.0.1 1
bbtools 38.70 2 1.9
bcalm 2.2.0 3 2.2.1 2.2.0.r49.g890ea4a
beast2 2.6.1 3 2.6.0 2.5.1 2.4.7 2.4.4
berokka 0.2 1
bfc r181 2 0.2
biobloomtools 2.3.2 1
biomake 0.1.5 1
bioperl 1.007002 6 1.007002 1.7.7 1.7.62 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 9999
blast 2.2.31 3 2.10.02 1.0
blast-legacy 2.2.26 1
blat 36 5 35 34 3.2.22 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bonsai 0.3 3 1.3.92
bowtie 1.2.3 11 1.2.36 1.2.2 1.1.23 1.1.1 1.0.1 1.0.02 0.12.72
bracken 2.2 1
breseq 0.33.0 1
busco 4.0.4 2 3.0.0
bwa-mem2 2.0pre1 3 2.0pre1 r83.a06c1af
cannoli 0.8.0 1
canu 1.9 5 1.93 1.82 1.7.1 1.7 1.6
cap3 2015-02-11 2 20091029
cd-hit 4.8.1 9 4.8.14 4.6.82 4.6.62 4.6.5 4.6.42 4.6.1 4.5.7
centrifuge 1.0.3 3 1.0.4 1.0.3 1.0.3beta
circlator 1.5.5 2 1.5.6 1.5.5 1.4.1
circos 0.69-9 5 0.69.9 0.69.6 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml 1.12 3 1.12 1.11
clustal-omega 1.2.4 9 1.2.48 1.2.1
clustalw 2.1 13 2.111 1.832
cluster-picker 1.2.5 1
consel 0.20 2 0.1
Project Selected Spr Newest Outdated Ignored
crumble 0.8.1 1
cutadapt 2.6 3 2.1 1.14
das-tool 1.1.1 1
dehomopolymerate 0.3 1
dida 1.0.1 1
disty 0.1.0 2 0.1.0
dsh-bio 1.3.1 1
dwgsim 0.1.12 3 0.1.122 0.1.11 r159.39a1bbb
e-mem 1.0.1 3 28oct2015 1.0.1
easel 0.43 1
edirect 12.4 2 12.1.20190819
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 14 6.6.010 6.5.7 6.4.0 6.3.1 6.0.1
epa-ng 0.3.6 1
exabayes 1.5 2 1.4.1
exonerate 2.4.0 10 2.4.07 2.2.03
express-rna-seq 1.5.3 3 1.5.12
fasta 36.3.8g 6 36.3.8h2 36.3.8g2 36.3.8 36.3.5e 21.1.1
fastani 1.1 1
fastp 0.20.0 6 0.20.04 0.19.6 0.14.1
fastq-pair 1.0 2 1.0
fasttree 2.1.11 6 2.1.112 2.1.103 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq 1.1 1
fermi-lite 0.1 2 0.1
figtree 1.4.4 6 1.4.44 1.4.3 1.4.22 1.4 1.3.1
filtlong 0.2.0 3 0.2.0 0.2.0-1.d1bb46d
finch-rs 0.3.0 2 0.3.0
flash-seq 1.2.11 1
flowcraft 1.4.1 1
flye 2.6 1
fraggenescan 1.31 2 1.30
freebayes 1.3.2 6 1.3.2 1.3.12 1.2.03 1.1.0 1.0.2-1.3ce827d 1.0.1.r0.gefe685d 2017-08-23
fwdpp 0.6.1 1
gappa 0.4.0 3 1.3.52 1.3.3 1.3.2 1.3.1
gatk 4.1.4.1 5 4.1.4.1 4.0.7.0 4.0.6.0 3.8-1 2.4 9999
gblocks 0.91b 3 0.91b2
gemma 0.98.1 4 0.98.12 0.98 0.97
genome-painter 0.0.6 2 0.0.8
gepard 1.40 1
gfakluge 1.1.0 1
gfalint 1.0.0 1
gfaview 0.0.53 1
ghostz 1.0.2 2 1.0.2
gmap-gsnap 2019-09-12 2 2019.03.15
groot 0.8.5 2 18.8
gzstream 1.5 5 1.54
harvest-tools 1.3 2 1.3
hisat2 2.1.0 7 2.1.03 2.0.52 2.1.0.232
hmmer 2.4i 15 3.38 3.2.15 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
Project Selected Spr Newest Outdated Ignored
humann2 0.11.1 1
idba 1.1.3 3 1.1.32 1.1.2
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
infernal 1.1.2 7 1.1.33 1.1.24 1.1.1 1.1rc4 1.0.22
iqtree 1.6.12 4 1.6.123 1.6.11 1.6.9 1.6.5 1.6.1 1.5.3 1.3.11.1
ispcr 33 1
iva 1.0.9 3 1.0.9 1.0.8 0.10.1
jellyfish-k-mer 2.2.10 6 2.3.02 2.2.103 2.2.8 2.2.6 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
jspecies 1.2.1 1
k8 0.2.4 1
kaiju 1.7.0 2 1.6.3
kalign 3.1.1 4 2.032 2.0.4
kat 2.4.1 1
kent-tools 367 1
kma 1.2.21 3 1.2.212 1.2.10a
kmc 3.1.1 3 2.3 2.0
kmergenie 1.7048 1
kounta 0.2.0 1
kr-mutation-distances 2.0.2 1
kraken 1.1.1 5 1.1.12 1.12 0.10.5beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.0.8 3 2.0.8beta 2.0.8-beta
kssd 1.0 2 1.0
last 1047 5 10473 983 963 938 921 830 712 490 393 299 230 189
lastz 1.04.00 2 1.04.00
legsta 0.3.7 1
libbigwig 0.4.4 5 0.4.44 0.4.2
libdivsufsort 2.0.1 9 2.0.18 9999
libmuscle 3.7 3 3.72
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
libsequence 1.9.7 1
light-assembler 1.0.0 1
lighter 1.1.1 1
links-scaffolder 1.8.7 1
lofreq 2.1.3.1 1
lrsim 1.0 1
lsd2 1.3 1
magic-blast 1.3.0 1
maker 2.31.10 1
mapcaller 0.9.9.37 2 0.9.9.34
mash-genome-distance 2.2.2 4 2.2.22 2.2 2.12 2.0 1.1.1
masurca 3.3.5 1
maxbin2 2.2.6 1
mcl 14-137 8 14.1372 14_137 14-137 14 12.135 12 11 09_308 08.312 1.008.09.149
megahit 1.1.4 2 1.2.9 1.1.4
meme-motif-discovery 5.1.0 4 5.1.02 4.11.2_p2
metabat 2.13 3 2.12.1 0.32.4
metaphlan 1.7.8 1
mhap 2.1.3 2 2.1.3 2.1.1 1.6
minced 0.4.0 2 0.3.2
Project Selected Spr Newest Outdated Ignored
minia 3.2.1 4 3.2.1 3.2.1git20191130.5 1.6906 1.6088 1.6067 3.2.1.r12.g5b131b9
miniasm 0.3 2 0.3 0.2
minigraph 0.2 1
minimap 0.2 2 0.2
minimap2 2.17 6 2.174 2.15 2.10
mir-prefer 0.24 1
mlst 2.18.0 1
mmtf-cpp 1.0.0 9 1.0.08
mosdepth 0.2.3 3 0.2.6 0.2.3
mothur 1.42.3 5 1.43.02 1.42.1 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mp-est 2.0 1
mpboot 1.1.0 1
mrbayes 3.2.7 7 3.2.7a 3.2.7 3.2.6 3.2.3 3.2.2 3.1.24
mreps 2.6.01 2 2.6.01
mummer 3.23 6 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 10 3.8.15515 3.8.315
nanofilt 2.5.0 1
nanopolish 0.11.1 3 0.11.3 0.11.1-1.6331dc4 0.11.1 0.11.0 0.9.0 0.5.0 0.4.0
newick-utils 1.6 4 1.6 1.5.0 1.6-1.da121155
nextflow 19.04.1 3 20.01.0 19.04.1
nextgenmap 0.5.5 1
ngmaster 0.5.5 1
ngmerge 0.2 1
nonpareil-metagenomic-coverage 3.3.1 1
ntcard 1.2.1 1
ntedit 1.3.1 1
nthits 0.0.1 1
ntjoin 1.0.1 1
nullarbor 2.0.20191013 1
nxrepair 0.13 1
nxtrim 0.4.3 1
oases 0.2.08 1
oma 2.4.1 1
orfm 0.7.1 2 0.7.1
paml 4.9i 8 4.9j3 4.9i2 4.9h2 4.9g 4.9e 4.8 4.7 4.5 4.4e 4.4c
pandaseq 2.11 2 2.11
panito 0.0.1 1
parasail 2.4.1 1
parsnp 1.2 2 1.2.1 1.2
pathvisio 3.3.0 2 3.3.0
peat 1.2.5 2 1.0.2
phlawd 3.4b 1
phylip 3.697 9 3.6973 3.6963 3.6952 3.694
phylobayes 4.1e 2 4.1b
phyml 3.3.20190321 8 3.3.201909095 3.3.20190321 3.3.20180621 3.3.20180214 3.3.20170530 3.2.0 2.4.5 r121.ab59039 201204122 20110919
phyx 1.01 2 1.01 0.999
pilon 1.23 2 1.23 1.22
pirate 1.0.2 1
porechop 0.2.4 3 0.2.4 0.2.3-1.289d5dc
portcullis 1.1.0 1

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