Projects

200 project(s) on this page

Metapackage	In Homebrew tap Brewsci/bio	Spread	Newest	Outdated	Ignored
abacas	1.3.1	2	1.3.1
abricate	0.8.10	1
adam	0.26.0	1
ale-assemby-likelihood-estimator	0.0.20180904	1
andi	0.12	3	0.122	0.11 0.10 0.9.6.1
aragorn	1.2.38	3	1.2.382	1.2.36
arcs	1.0.5	1
art	20160605	3		2.0 0.9.01
artemis	17.0.1	7	17.0.12	16.0.17 16.0.0 1.4.03	17.0.1.11
ascp∗	3.7.7	1
astral-species-tree	5.5.6	1
bali-phy	3.4.1	3	3.4.1	3.4 3.3 3.1.2 3.0.3
bamm-bayesian	2.5.0	1
bandage	0.8.1	2	0.8.1
barrnap	0.9	2	0.9	0.8 0.7
bazam	1.0.1	1
bcalm	2.2.0	1
beast2	2.5.0	3	2.5.1	2.4.7 2.4.4
berokka	0.2	1
bfc	r181	1
biobloomtools	2.3.2	1
biomake	0.1.5	1
bioperl∗	1.007002	5	1.007002	1.7.4 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9	9999
blast-legacy∗	2.2.26	1
blat	36	3		35 34
bonsai	0.3	2			1.3.9
bowtie∗	1.2.2_p1	8	1.2.2_p1	1.2.22 1.2.0 1.1.23 1.1.1 1.0.1 1.0.02 0.12.72	v2.2.9.r9.g9c90266
bracken	2.2	1
breseq	0.33.0	1
busco	3.0.2	2			3.0.0
cannoli	0.3.0	1
canu	1.8	4	1.83	1.7.1 1.7 1.6
cap3	2015-02-11	2	20091029
cd-hit	4.6.8	8	4.8.1	4.6.82 4.6.63 4.6.52 4.6.42 4.6.1 4.5.7
centrifuge	1.0.3	3	1.0.4	1.0.3 1.0.3beta
circlator	1.5.5	2	1.5.5	1.5.1 1.4.1 1.4.0
circos∗	0.69-6	5	0.69.6	0.69.5 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml	1.11	2	1.11
clustal-omega∗	1.2.4	8	1.2.47	1.2.1
clustalw∗	2.1	10	2.19	1.83
consel	0.20	1
crumble	0.8.1	1
cutadapt∗	1.16	3	1.18	1.14
das-tool	1.1.1	1
dida	1.0.1	1
disty	0.1.0	1
dsh-bio	1.1	1
dwgsim	0.1.12	3	0.1.122	0.1.11	r159.39a1bbb
e-mem	1.0.1	2	1.0.1	1.0.0
easel∗	0.43	1
Metapackage	In Homebrew tap Brewsci/bio	Spread	Newest	Outdated	Ignored
edirect∗	9.70	2	10.2
elph	1.0.1	5	1.0.14
ema	0.6.2	1
emboss∗	6.6.0	12	6.6.08	6.5.7 6.4.0 6.3.1 6.0.1
epa-ng	0.3.5	1
exabayes	1.5	2		1.4.1
exonerate	2.2.0	9	2.4.06	2.2.03
express-rna-seq	1.5.2	3		1.5.12
fasta	36.3.8g	5	36.3.8g2	36.3.8 36.3.5e 21.1.1
fastani	1.1	1
fastp	0.19.5	3	0.19.6	0.14.1
fasttree	2.1.10	6	2.1.104	2.1.9 2.1.82 2.1.7 2.1.4
fastuniq	1.1	1
fermi-lite	0.1	2	0.1
figtree	1.4.3	5	1.4.43	1.4.3 1.4.22 1.4 1.3.1
filtlong	0.2.0	2	0.2.0
finch-rs	0.1.8	2	0.1.9
flash-seq	1.2.11	1
flowcraft	1.4.1	1
flye	2.3.7	1
fraggenescan	1.31	2		1.30
freebayes	1.2.0	5	1.2.03	1.1.0 1.0.2	1.0.1.r0.gefe685d 2017-08-23
fwdpp	0.6.1	1
gatk	4.0.11.0	4	4.0.11.0	4.0.7.0 4.0.6.0 2.4	9999
gblocks	0.91b	2	0.91b
gemma	0.98	3	0.98.1	0.98 0.97
genome-painter	0.0.6	1
gepard	1.40	1
gfakluge	1.1.0	1
gfalint	1.0.0	1
gfaview	0.0.53	1
gmap-gsnap∗	2018-07-04	2	2018.07.04
gzstream	1.5	5	1.54
harvest-tools	1.3	2	1.3	1.2
hisat2	2.1.0	7	2.1.03	2.0.52	2.1.0.232
hmmer	2.4i	13	3.2.17	3.1b24 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.22
humann2	0.11.1	1
idba	1.1.3	3	1.1.32	1.1.2
indel-seq-gen	2.1.03	1
indelible	1.03	2	1.03
infernal∗	1.1.2	6	1.1.24	1.1.1 1.1rc4 1.0.22
iqtree	1.6.8	4	1.6.10	1.6.92 1.6.5 1.6.1 1.5.5 1.5.3 1.3.11.1
ispcr	33	1
iva	1.0.8	3	1.0.9	1.0.8 0.10.1
jellyfish-k-mer	2.2.10	6	2.2.103	2.2.8 2.2.62 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
jspecies	1.2.1	1
k8	0.2.4	1
kaiju	1.6.3	2	1.6.3
kat	2.4.1	1
kent-tools∗	367	1
Metapackage	In Homebrew tap Brewsci/bio	Spread	Newest	Outdated	Ignored
kma	0.14.3	1
kmc	3.1.0	3		2.3 2.0
kmergenie	1.7048	1
kr-mutation-distances	2.0.2	1
kraken∗	1.1	5	1.13	0.10.5beta 0.1	r70.2c5f7ce 32.368a837
kraken2	2.0.7	1
last	926	4	9632	938 921 869 830 712 490 393 299 230 189
lastz	1.04.00	2	1.04.00
legsta	0.3.2	1
libdivsufsort	2.0.1	8	2.0.17		9999
libmuscle∗	3.7	3	3.72
libpll	0.3.2	3	1.0.11	0.3.2 0.3.1
libsequence	1.9.3	1
light-assembler	1.0.0	1
lighter	1.1.1	1
links-scaffolder	1.8.6	1
lofreq	2.1.3.1	1
lrsim	1.0	1
magic-blast	1.3.0	1
maker	2.31.10	1
mash-genome-distance	2.1	3	2.12	2.0 1.1.1
maxbin2	2.2.5	1
mcl	14-137	8	14.1372 14_137 14-137	14 12.135 12 11 09_308 08.312 1.008.09.149
megahit	1.1.3	1
meme-motif-discovery∗	5.0.4	4	5.0.4	4.12.0 4.11.2_p2
metaphlan	1.7.8	1
mhap	2.1.3	2	2.1.3	2.1.1 1.6
minced	0.3.0	2	0.3.2
minia	3.2.0	2	3.2.0	1.6906 1.6088 1.6067
miniasm	0.3	2	0.3	0.2
minimap	0.2	2	0.2
minimap2	2.16	4		2.152 2.102
mir-prefer	0.24	1
mlst	2.16.1	1
mmtf-cpp∗	1.0.0	4	1.0.03
mosdepth	0.2.3	3	0.2.32
mothur	1.40.3	4	1.41.21	1.41.3 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2
mp-est	2.0	1
mpboot	1.1.0	1
mrbayes	3.2.6	7	3.2.63	3.2.3 3.2.2 3.1.24
mummer	3.23	6	3.233	3.22 3.20	4.0.0.b2.2
muscle-sequence-alignment	3.8.1551	8	3.8.15513	3.8.315
nanopolish	0.10.2	3	0.11.0	0.10.22 0.9.0 0.5.0 0.4.0
newick-utils	1.6	4	1.62	1.5.0
nextflow	0.32.0	2	0.32.0
nextgenmap	0.5.5	1
ngmaster	0.5.5	1
nonpareil-metagenomic-coverage	3.3.1	1
ntcard	1.1.0	1
nxrepair	0.13	1
Metapackage	In Homebrew tap Brewsci/bio	Spread	Newest	Outdated	Ignored
nxtrim	0.4.3	1
oases	0.2.08	1
oma	2.3.1	1
orfm	0.7.1	2	0.7.1
paml∗	4.9h	8	4.9i	4.9h3 4.9g 4.9e2 4.8 4.7 4.5 4.4e 4.4c
panito	0.0.1	1
parasail	2.2.0	1
parsnp∗	1.2	2	1.2
pathvisio	3.3.0	2		3.2.4
phlawd	3.4b	1
phylip	3.697	8	3.6973	3.6963 3.695 3.694
phyml∗	3.3.20180621	6	3.3.201806213	3.3.20180214 3.3.201705302 3.2.0 2.4.5	r121.ab59039 20120412 20110919
phyx	0.999	2	0.999
pilon	1.22	2	1.23	1.22
porechop	0.2.3	3	0.2.4	0.2.3
portcullis	1.1.0	1
prank∗	170427	4		150803 140603 0.0.170427 0.0.150803 0.0.140110
prokka	1.13	2	1.13.4
pullseq	1.0.2	1
pymol∗	2.3.0	15	2.3.04	2.2.05 2.1.1 2.1.03 1.9.0.0.svn4184 1.8.6.04 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12
python:matplotlib∗	2.2.3	32	3.0.39	3.0.24 3.0.1 3.0.0 2.2.44 2.2.312 2.2.26 2.2.1 2.2.0 2.1.23 2.1.12 2.1.0 2.0.22 2.0.1 2.0.04 1.5.34 1.5.2 1.5.15 1.5.02 1.4.32 1.4.22 1.4.1 1.4.0 1.3.13 1.3.0 1.2.1 1.2.04 1.1.1rc1.git20120423 1.0.0 0.99.1.23	9999 r26679.b9b02f189
quast	5.0.2	1
quickmerge	0.2	1
quicktree	2.4	1
quip	1.1.8	1
r8s	1.81	2		1.80
racon	1.3.1	2	1.3.2	1.3.1
rapidnj	2.3.2	1
raxml∗	8.2.12	7	8.2.124	8.2.11 8.2.10 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
raxml-ng∗	0.7.0	1
rcorrector	1.0.3	1
readseq	2.1.30	4			19930201 2.1.30 1
realphy	1.12	1
repaq	0.2.0	1
repeatmasker∗	4.0.7	4	4.0.8	4.0.5 4.0.1
rmblast	2.2.28	3	2.2.28	1.2
rtg-tools	3.9	2		3.8.4
salmid	0.122	2	0.1.23
salmon	0.9.1	4	0.12.02	0.9.1 0.7.2
sambamba	0.6.8	4	0.6.82	0.6.7
samblaster	0.1.24	2	0.1.24
samclip	0.2	1
sdsl-lite	2.1.1	4	2.1.12	2.0.3 v2.1.1.r132.gddb0fbbc
seq-gen	1.3.4	2	1.3.4	1.3.3 1.3.2
seqan	2.4.0	9	2.4.07	2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3	9999 r628.35e4fba r.fcad60a
seqkit	0.10.1	2		0.9.0
sga	0.10.15	3	0.10.152	0.10.14
shovill	1.0.4	1
simulate-pcr	1.2	1
ska-split-kmer	1.0	1

Legend:

• Spread means how many repository families (e.g. all Debian versions are a single family) contain this package.
• newest^#repos - newest known version. The number shows how many repository families have this version.
• devel - newest known devel (or unstable) version. There may be both devel and newest versions for a given package.
• unique - package is only present in a single repository family, there are no other sources to compare it against, so although it's latest version known to repology, is not really reliable.
• outdated - outdated version which requires updating.
• legacy - outdated version when a newer version is present. This is assumed to be legacy version preserved for e.g. compatibility.
• rolling - package is fetched from always latest snapshot or VCS master/trunk, so it is always latest and is not a subject for comparison.
• noscheme - the project does not have official versioning scheme, so versions used in repositories which are basically random.
• incorrect - version is known to be incorrect (e.g. version not officially released yet, or lacking alpha/beta/rc qualifier).
• untrusted - this source is known to likely supply incorrect versions, so is ignored proactively.
• ignored - version is ignored and excluded from comparison for some other reason (e.g. snapshots).