Projects

200 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 4 1.3.13
abricate 1.0.1 1 1.0.1 HEAD
abyss-explorer 2.1.0 1
adam 0.34.0 2 1.1.1
ale-assemby-likelihood-estimator 0.0.20180904 1
andi 0.13 7 0.145 0.13 0.12 0.9.6.1 0.14.3
any2fasta 0.4.2 4 0.4.23
apbspdb2pqr 1.5 1
aragorn 1.2.38 6 1.2.415 1.2.382 1.2.36
arcs 1.2.1 2 1.2.5
arks 1.0.4 1
art-biostatistics 20160605 1
artemis-genome-viewer 17.0.1 4 18.2.02 18.1.0 17.0.1.11 17.0.1 16.0.17 16.0.0
ascp 3.7.7 1
astral-species-tree 5.7.1 4 5.7.13
bali-phy 3.6.0 4 4.0 4.0~beta16 4.0-beta10 4.0~beta2 3.6.13 3.6.0 3.4.1 3.4
bam2fastx 1.3.0 1
bamm-bayesian 2.5.0 3 2.5.02
bandage 0.8.1 5 0.9.03 0.8.12
barrnap 0.9 5 0.94 0.8 0.7
bazam 1.0.1 1
bbtools 38.87 2 39.27 1.9
bcalm 2.2.2 3 2.2.3 2.2.1 2.2.0.r49.g890ea4a
beast2 2.6.3 5 2.7.72 2.7.6 2.7.4 2.7.3 2.6.6 2.6.3 2.6.0 2.5.1 2.4.7 2.4.4
berokka 0.2.3 1
bfc r181 5 1.12.0 1.0.1 0.2 g20150417
bifrost 1.0.5 6 1.20.22 1.3.52 1.3.1
biobloomtools 2.3.3 1
biomake 0.1.5 1
bioperl 1.007002 6 1.7.84 1.7.72 1.7.2 1.6.924 1.6.923 1.6.9 HEAD
blat 36 5 37 34 3.2.24 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bmdca 0.8.12 2 0.8.13
bodr 10 13 1010 9 8
bonsai-taxonomic-analysis 0.3 1
bowtie 1.3.0 12 1.3.111 1.3.03 1.2.32 1.2.2 1.1.2 1.0.0 0.12.7
bracken 2.6.0 3 3.1 2.9
breseq 0.35.4 2 0.39.0 0.38.1 HEAD
busco 5.0.0 4 5.5.0 5.4.4 5.4.3 5.2.2 5.0.0 3.0.0
bwa-mem2 2.0 5 2.2.13 r183.d43752d 2023-03-18
cannoli 0.12.0 1
canu 1.9 6 2.3 2.24 2.0 1.9 1.8 1.6 2.2.r162.gc61ebbb7a
cap3 2015-02-11 3 20091029 2015-02-11
cd-hit 4.8.1 11 4.8.19 4.6.8 4.6.6 4.6.4 4.6.1-2012-08-27
centrifuge 1.0.3 6 1.0.4.23 1.0.4.1 1.0.4 1.0.3 1.0.3~beta
circlator 1.5.5 2 1.5.6 1.5.5
circos 0.69-9 7 0.69.92 0.69-92 0.69_9 0.69.6 0.69 0.64 0.49
clipper4coot 2.1.20180802 1
clonalframeml 1.12 3 1.132 1.12 1.11
clustal-omega 1.2.4 12 1.2.410 1.2.2 1.2.1
clustalw 2.1 15 2.112 1.832 2.1+lgpl 2.1+lgpl
Project Selected Spr Newest Outdated Ignored
cluster-picker 1.2.5 1
consel 0.20 3 0.1 2011.05.12
crumble 0.8.3 1
cutadapt 3.3 5 5.1 4.9 4.0 1.14
das-tool 1.1.2 1
dehomopolymerate 0.4.0 1
delly 0.8.5 5 1.3.32 1.3.1 1.2.6 1.1.82 1.1.62 0.9.1 0.8.7 0.8.3 0.8.2 0.8.1
dida 1.0.1 3 6.0.30 6.0.6.0 6.0.5.0 6.0.4.0 6.0.3.0 6.0.2.0 6.0.1.0 6.0.0.1 6.0.0.0 5.5.0.0 5.4.0.0 5.3.0.2 5.2.0.0 5.1.0.0 5.0.6.0 5.0.5.0 5.0.4.0 3.7.8.8 1.0.4 1.0.4.r5.gbcb26e5 6.3.1.2 6.3.1.1 6.3.1.0 6.3.0.2 6.3.0.1 6.3.0.0 6.2.4.5 6.2.4.0 6.2.3.0 6.2.2.0 6.2.1.0 6.2.0.0 6.1.6.0 6.1.5.0 6.1.4.0 6.1.3.0 6.1.2.0 6.1.1.0 6.1.0.0
discovardenovo 52488 2 52488
disty 0.1.0 2 0.1.0
dsh-bio 2.0.3 1
dssp 3.1.4 10 4.5.32 4.5.02 4.4.112 4.4.103 4.4.7 4.4.5 4.2.2.1 4.2.2 4.0.5 4.0.4 4.0.0 3.1.43 3.0.02 2.2.13
dwgsim 0.1.12 2 0.1.14 0.1.13 0.1.12 0.1.11
e-mem 1.0.1 4 28oct2015 1.0.12
easel 0.46 2 0.49
edirect 13.8 3 13.3.20200128 24.2.20250612
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 15 6.6.012 6.5.7 6.4.0 6.0.1
epa-ng 0.3.8 1
exabayes 1.5 3 1.5.12
exonerate 2.4.0 11 2.4.09 2.2.02
express-rna-seq 1.5.3 3 1.5.32
falco-fastqc 0.2.4 3 1.2.3 1.2.1
faqcs 2.10 1
fasta 36.3.8h 7 36.3.8i2 36.3.8h_2020-05-04 36.3.8h.2020-02-11 36.3.8h2 36.3.8g2 36.3.8d 36.3.8 21.1.1 36.3.8i.2023.09t 36.3.8i.14-Nov-2020
fastani 1.32 6 1.344 1.33
fastp 0.20.1 10 0.26.03 0.24.2 0.24.12 0.24.03 0.23.44 0.23.3 0.23.23 0.22.0 0.20.1 0.20.0 0.19.6
fastq-pair 1.0 3 1.02
fasttree 2.1.11 9 2.1.117 2.1.102 2.1.9 2.1.8 2.1.7
fastuniq 1.1 2 1.1
fermi-lite 0.1 4 0.1 0.1.r13.g85f159e 0.1.13 0.1+git20221215.85f159e 0.1+git20190320.b499514
figtree 1.4.4 7 1.4.45 1.4.3 1.4.2 1.4 1.4.4.14
filtlong 0.2.0 5 0.2.13 0.2.0-1.d1bb46d 0.2.0
finch-rs 0.3.0 2 0.6.0
flash-seq 1.2.11 6 1.2.115
flowcraft 1.4.1 1
flye 2.8.3 3 2.9.62 2.9.52 2.9.42 2.9.3 2.9.1 HEAD
fraggenescan 1.31 2 1.31
freebayes 1.3.2 8 1.3.10 1.3.94 1.3.7 1.3.62 1.3.52 1.3.2 1.3.1 1.2.0 1.1.0 HEAD
fwdpp 0.8.1 1
gappa-phylogenetic-analysis 0.6.1 1
gatk 4.2.0.0 6 4.6.2.02 4.6.1.03 4.5.0.02 4.4.0.0 4.3.0.0 3.8-1
gblocks 0.91b 4 0.91b3
gemma 0.98.4 5 0.98.53 0.98.4 0.98.3 0.98.1
genome-painter 0.0.8 2 0.0.8
gepard 1.40 1
gfakluge 1.1.2 1
gfalint 1.0.0 1
gfaview 0.0.53 1
Project Selected Spr Newest Outdated Ignored
gffcompare 0.12.1 5 0.12.62 0.12.2 0.10.15-1.be56ef4
ghostz 1.0.2 3 1.0.22
gmap-gsnap 2019-09-12 3 2019.03.15 2023-07-20
groot 1.1.2 2 1.0.2 1.0.0.r85.gca6c8f2
gzstream 1.5 5 1.54 1.5+git20171107.9a20658 1.5+git20171107.9a20658
harvest-tools 1.3 2 1.3
hh-suite 3.3.0 4 3.3.03
hisat2 2.2.1 9 2.2.18 2.1.0 2.2.1.r55.g5086938
hmmer 2.4i 17 3.411 3.3.25 3.3 3.2.1 3.1beta2 3.1b2 3.1_beta2 3.1b1 3.02 3 2.4i 2.3.23
hssp 3.1.5 3 3.1.52
humann2 0.11.1 1
idba 1.1.3 5 1.1.34 1.1.2 9999
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
infernal 1.1.3 8 1.1.55 1.1.42 1.1.3 1.1.2 1.1.1 1.1~rc4 1.0.22
iqtree 1.6.12 7 3.0.1 2.4.0 2.3.6 2.3.4 2.2.2.72 2.2.2.4 2.2.0.4 2.0.7 1.6.122 1.6.9 1.6.1 1.3.11.1
iqtree2 2.0.7 2 2.1.3
ispcr 33 1
iva 1.0.9 2 1.0.11 1.0.9
ivar 1.3 3 1.4.4 1.4.3 1.4.22 1.3.1 1.3
jellyfish-k-mer 2.3.0 8 2.3.14 2.3.04 2.2.10 2.2.8 2.2.4 1.1.122 1.1.11 1.1.10
jmol 14.31.34 15 16.3.27 16.3.25 16.3.232 16.3.21 16.3.17 16.3.7 16.3.1 16.2.33 16.2.17 16.2.153 16.1.63 16.1.47 16.1.45 16.1.43 16.1.25 16.1.13 16.1.11 16.1.9 14.32.832 14.32.76 14.32.74 14.32.73 14.32.3 14.31.44 14.31.20 14.31.0 14.30.0 14.29.54 14.29.52 14.6.4+2016.11.05 14.2.9_2014.11.23 12.2.32
jspecies 1.2.1 1
k8 0.2.5 2 0.2.4
kaiju-metagenomics 1.7.4 4 1.10.1 1.9.0 1.6.2
kalign 3.3 6 3.4.04 3.3.53 3.3.1 3.3 2.03+20110620 2.03
kat 2.4.2 1
kma 1.3.6 4 1.5.1 1.5.0 1.4.21 1.4.15 1.4.14 1.4.11 1.3.28 1.3.23 1.3.10 1.2.21
kmc 3.1.1 2 3.2.4 3.2.1 3.1.1 2.3
kmergenie 1.7048 2 1.7051
kounta 0.2.3 1
kr-mutation-distances 2.0.2 1
kraken 1.1.1 6 1.1.13 1.1 0.10.5~beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.1.1 6 2.14 2.1.52 2.1.3 2.1.23 2.1.1 2.0.8~beta HEAD
kssd 1.1 2 2.21 1.1
last 1133 6 16393 1609 1592 1543 1542 14992 1453 1447 1411 1260 1179 1060 963 921 712 393
lastz 1.04.03 6 1.04.522 1.04.41 1.04.222 1.04.15 1.04.032 HEAD
legsta 0.5.1 1
libbigwig 0.4.4 9 0.4.76 0.4.6 0.4.43 9999 0.4.8
libccp4 6.5.1 7 8.0.04 6.5.12 6.4.6 6.4.5 r1896
libdivsufsort 2.0.1 14 2.0.2.1 2.0.112 HEAD 2.0.2.1.20151027
libgff 2.0.0 7 2.0.06 1.0
libpll 0.3.2 4 1.0.11 0.3.22 0.3.1
libsequence 1.9.8 2 1.9.8
light-assembler 1.0.0 1
lighter 1.1.2 5 1.1.32 1.1.23 9999
links-scaffolder 1.8.7 1
lofreq 2.1.3.1 2 2.1.5
lrsim 1.0 1
lsd2 1.7.1 1
Project Selected Spr Newest Outdated Ignored
magic-blast 1.3.0 1
maker 2.31.11 2 3.01.04
mapcaller 0.9.9.39 2 0.9.9.41
mash-genome-distance 2.2.2 5 2.33 2.2.2 2.12 2.0
masurca 3.4.1 3 4.1.1 4.1.0 4.0.1
maxbin2 2.2.7 1
mcl 14-137 9 22.282 22-282 14-1373 14_1372 14.1372 12-135 1.008.09.149
megahit 1.2.9 9 1.2.9.20 1.2.96 1.1.4
meme-motif-discovery 5.1.0 5 5.5.8 5.5.72 5.5.42
metabat 2.15 4 2.153
metaphlan 1.7.8 2 4.0.4
mhap 2.1.3 3 2.1.32 2.1.1 1.6
mican 2019.11.27 2 2019.11.27
minced 0.4.2 3 0.4.2 0.3.2
minia 3.2.1 4 3.2.6 3.2.1+git20200522.4960a99 3.2.1 1.6906 1.6067 3.2.1.r12.g5b131b9
miniasm 0.3 7 0.35 0.2 2018-3-30
minigraph 0.10 2 0.212
minimap 0.2 3 0.2 0-unstable-2024-11-23
minimap2 2.17 9 2.294 2.285 2.27 2.262 2.243 2.17 2.15 2.24.r39.g5e72423
mir-prefer 0.24 1
mlst 2.19.0 2 2.23.0
mmdb2 2.0.20 6 2.0.224 2.0.1
mmtf-cpp 1.0.0 16 1.1.014 1.0.08
mosdepth 0.3.1 4 0.3.112 0.3.10 0.3.9 0.3.8 0.3.6 0.3.5 0.3.4 0.3.32 0.3.1
mothur 1.44.3 6 1.48.3 1.48.2 1.48.1 1.48.03 1.47.0 1.44.3 1.42.1 1.39.5 1.36.1 1.31.2 1.27.0 1.41.21
mp-est 2.0 1
mpboot 1.1.0 2 1.2
mrbayes 3.2.7 9 3.2.7a4 3.2.75 3.2.6 3.2.2 3.1.2 HEAD
mreps 2.6.01 3 2.6.012
mummer 3.23 8 4.0.14 4.0.0rc1 3.233 3.20
muscle-sequence-alignment 3.8.1551 12 5.32 5.1.03 3.8.15515 3.8.315
nanofilt 2.7.1 2 2.8.0 2.6.0
nanopolish 0.12.0 5 0.14.03 0.13.3 0.13.2 0.11.3 0.11.0 0.9.0 0.4.0 9999 0.14.0.r10.g21c75db
ncbi-blast+ 2.2.31 2.2.26 12 2.16.06 2.14.12 2.14.0 2.13.03 2.12.0 2.11.0 2.9.0 2.8.1 2.6.0 2.2.31 2.2.29 2.2.28 2.2.26
newick-utils 1.6 3 1.6 1.6-1.da121155
nextflow 20.07.1 5 25.04.3 25.04.2 24.08.0-edge 24.04.3 22.04.5
nextgenmap 0.5.5 1
ngmaster 0.5.6 1
ngmerge 0.3 2 0.3
nonpareil-metagenomic-coverage 3.3.4 1
ntcard 1.2.2 3 1.2.22 9999
ntedit 1.3.4 1
nthits 0.0.1 2 1.0.2
ntjoin 1.0.6 1
nullarbor 2.0.20191013 1
nxtrim 0.4.3 3 0.4.32
oases 0.2.08 1
oma-orthologs 2.4.2 1
orfm 0.7.1 3 0.7.12
paml 4.9j 10 4.10.92 4.10.74 4.10.6 4.9j4 4.9h 4.9g 4.9e 4.8 4.7

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