Projects

200 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 4 1.3.13
abricate 1.0.1 1 1.0.1 HEAD
abyss-explorer 2.1.0 1
adam 0.34.0 2 1.1.1
ale-assemby-likelihood-estimator 0.0.20180904 1
andi 0.13 4 0.143 0.13 0.12 0.9.6.1
any2fasta 0.4.2 4 0.4.23
apbspdb2pqr 1.5 1
aragorn 1.2.38 5 1.2.414 1.2.382 1.2.36
arcs 1.2.1 2 1.2.2
arks 1.0.4 1
art-biostatistics 20160605 1
artemis-genome-viewer 17.0.1 4 18.2.02 18.1.0 17.0.1.11 17.0.1 16.0.17 16.0.0
ascp 3.7.7 1
astral-species-tree 5.7.1 3 5.7.12
bali-phy 3.6.0 4 4.0~beta2 3.6.13 3.6.0 3.4.1 3.4 4.0-beta6
bam2fastx 1.3.0 1
bamm-bayesian 2.5.0 3 2.5.02
bandage 0.8.1 5 0.9.03 0.8.12
barrnap 0.9 5 0.94 0.8 0.7 0.9+git20180825.2.acf3198
bazam 1.0.1 1
bbtools 38.87 2 39.01 1.9
bcalm 2.2.2 3 2.2.3 2.2.1 2.2.0.r49.g890ea4a
beast2 2.6.3 5 2.7.53 2.7.4 2.7.3 2.6.7+git20220420.1.426c992 2.6.6 2.6.3 2.6.0 2.5.1 2.4.7 2.4.4
berokka 0.2.3 1
bfc r181 5 1.12.0 1.0.1 0.2 g20150417
bifrost 1.0.5 3 1.2.1 1.0.5
biobloomtools 2.3.3 1
biomake 0.1.5 1
bioperl 1.007002 6 1.7.83 1.7.73 1.7.2 1.6.924 1.6.923 1.6.9 HEAD 1.7.8+git20220912.1.4c9acbe
blat 36 5 37 34 3.2.24 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bmdca 0.8.12 2 0.8.13
bodr 10 14 1011 9 8
bonsai-taxonomic-analysis 0.3 1
bowtie 1.3.0 12 1.3.110 1.3.04 1.2.33 1.2.2 1.1.2 1.0.1 1.0.0 0.12.7 1.3.1+git20210915.2.86c6d77
bracken 2.6.0 3 2.9 2.8
breseq 0.35.4 2 0.38.1
busco 5.0.0 4 5.5.0 5.4.7 5.4.4 5.4.3 5.2.2 5.0.0 3.0.0
bwa-mem2 2.0 4 2.2.1 2.0pre1 r183.d43752d 2023-03-18
cannoli 0.12.0 1
canu 1.9 6 2.25 2.0 1.9 1.8 1.6 2.2.r89.g769108f4b
cap3 2015-02-11 3 20091029 2015-02-11
cd-hit 4.8.1 11 4.8.19 4.6.8 4.6.6 4.6.4 4.6.1-2012-08-27 4.8.1+git20210420.1.4f6720f
centrifuge 1.0.3 4 1.0.42 1.0.3 1.0.3~beta
circlator 1.5.5 2 1.5.6 1.5.5
circos 0.69-9 7 0.69-92 0.69_9 0.69.9 0.69.6 0.69 0.64 0.55 0.49
clipper4coot 2.1.20180802 1
clonalframeml 1.12 3 1.122 1.11 1.12+git20200925.1.f808bb7
clustal-omega 1.2.4 11 1.2.49 1.2.2 1.2.1
clustalw 2.1 15 2.112 1.832 2.1+lgpl 2.1+lgpl
Project Selected Spr Newest Outdated Ignored
cluster-picker 1.2.5 1
consel 0.20 3 0.1 2011.05.12
crumble 0.8.3 1
cutadapt 3.3 4 4.4 4.0 1.14
das-tool 1.1.2 1
dehomopolymerate 0.4.0 1
delly 0.8.5 5 1.1.63 0.9.12 0.8.72 0.8.3 0.8.2 0.8.1
dida 1.0.1 3 1.0.80 1.0.4 1.0.4.r5.gbcb26e5 4.5.7.5 4.5.7.1 4.5.7.0 4.5.6.0 4.5.5.1 4.5.5.0 4.5.1.0 4.5.0.8 4.5.0.6 4.5.0.1 4.5.0.0 4.4.4.6 4.4.4.0 4.4.3.0 4.4.2.0 4.4.1.0 4.4.0.4 4.4.0.2 4.4.0.0 4.3.5.1 4.3.5.0 4.3.4.0 4.3.3.0 4.3.2.0 4.3.1.1 4.3.1.0 4.3.0.0 4.2.9.0 4.2.8.5 4.2.8.1 4.2.8.0 4.2.7.0 4.2.6.0 4.2.5.0 4.2.4.0 4.2.3.0 4.2.2.0 4.2.1.0 4.2.0.0 4.1.5.0 4.1.4.0 4.1.3.6 4.1.3.0 4.1.2.6 4.1.2.0 4.1.1.0 4.0.5.2 3.9.1.0 3.7.8.8
discovardenovo 52488 2 52488
disty 0.1.0 2 0.1.0
dsh-bio 2.0.3 1
dssp 3.1.4 10 4.4.3 4.4.22 4.4.1 4.3.1 4.2.2.1 4.2.2 4.0.5 4.0.4 4.0.0 3.1.43 3.0.11 3.0.02 2.2.13
dwgsim 0.1.12 3 0.1.14 0.1.13 0.1.122 0.1.11 r159.39a1bbb
e-mem 1.0.1 4 28oct2015 1.0.12
easel 0.46 1
edirect 13.8 2 13.3.20200128
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 15 6.6.011 6.5.7 6.4.0 6.0.1
epa-ng 0.3.8 1
exabayes 1.5 3 1.5.12 1.4.1
exonerate 2.4.0 11 2.4.09 2.2.02
express-rna-seq 1.5.3 3 1.5.32
falco-fastqc 0.2.4 2 1.2.1
faqcs 2.10 1
fasta 36.3.8h 7 36.3.8i.2023.09t 36.3.8i.14-Nov-2020 36.3.8i.14-Nov-2020+git20221202.1.162df08 36.3.8i 36.3.8h_2020-05-04 36.3.8h.2020-02-11 36.3.8h2 36.3.8g2 36.3.8 21.1.1
fastani 1.32 5 1.343 1.33+git20220702.1.d776e34 1.33
fastp 0.20.1 9 0.23.47 0.23.3 0.23.2+git20220519.1.1bc2c53 0.23.23 0.23.1 0.22.0 0.20.1 0.20.0 0.19.6
fastq-pair 1.0 3 1.02 1.0+git20210411.2.313b136
fasttree 2.1.11 8 2.1.115 2.1.103 2.1.9 2.1.8 2.1.7
fastuniq 1.1 1
fermi-lite 0.1 3 0.1 0.1.r13.g85f159e 0.1+git20221215.85f159e 0.1+git20190320.b499514
figtree 1.4.4 7 1.4.45 1.4.3 1.4.2 1.4 1.4.4.14
filtlong 0.2.0 5 0.2.13 0.2.0-1.d1bb46d 0.2.0 0.2.1+git20210730.1.c56f02b
finch-rs 0.3.0 2 0.6.0
flash-seq 1.2.11 5 1.2.114
flowcraft 1.4.1 1
flye 2.8.3 2 2.9.2 2.9.1
fraggenescan 1.31 2 1.31
freebayes 1.3.2 8 1.3.73 1.3.64 1.3.52 1.3.2 1.3.1 1.2.0 1.1.0 HEAD
fwdpp 0.8.1 1
gappa-phylogenetic-analysis 0.6.1 1
gatk 4.2.0.0 6 4.4.0.04 4.3.0.0 4.0.6.0 3.8-1
gblocks 0.91b 4 0.91b3
gemma 0.98.4 5 0.98.52 0.98.4 0.98.32 0.98.1
genome-painter 0.0.8 2 0.0.8
gepard 1.40 1
gfakluge 1.1.2 1
gfalint 1.0.0 1
gfaview 0.0.53 1
Project Selected Spr Newest Outdated Ignored
gffcompare 0.12.1 5 0.12.62 0.12.2 0.10.15-1.be56ef4
ghostz 1.0.2 3 1.0.22
gmap-gsnap 2019-09-12 3 2019.03.15 2023-07-20
groot 1.1.2 2 1.0.2 1.0.0.r57.g05fe640
gzstream 1.5 5 1.54 1.5+git20171107.9a20658
harvest-tools 1.3 2 1.3
hh-suite 3.3.0 4 3.3.03
hisat2 2.2.1 9 2.2.18 2.1.0 2.2.1.r55.g5086938 2.2.1+git20220316.1.5086938
hmmer 2.4i 17 3.48 3.3.29 3.3 3.2.1 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.02 3 2.4i 2.3.23
hssp 3.1.5 3 3.1.52
humann2 0.11.1 1
idba 1.1.3 5 1.1.34 1.1.2 9999 1.1.3+git20161230.1.a1bafe6
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
infernal 1.1.3 8 1.1.52 1.1.46 1.1.3 1.1.2 1.1.1 1.1~rc4 1.0.22
iqtree 1.6.12 7 2.2.2.74 2.2.2.4 2.2.0.4 2.0.7 1.6.122 1.6.9 1.6.1 1.3.11.1
iqtree2 2.0.7 3 2.2.2 2.1.3
ispcr 33 1
iva 1.0.9 2 1.0.11 1.0.9
ivar 1.3 3 1.4.22 1.3.1 1.3
jellyfish-k-mer 2.3.0 8 2.3.07 2.2.10 2.2.8 2.2.4 1.1.122 1.1.11 1.1.10
jmol 14.31.34 14 16.1.412 16.1.392 16.1.25 16.1.13 16.1.11 16.1.92 14.32.832 14.32.76 14.32.74 14.32.73 14.32.45 14.32.22 14.32.3 14.31.54 14.31.49 14.31.44 14.31.35 14.31.34 14.31.20 14.31.18 14.31.8 14.31.0 14.29.54 14.29.52 14.27.2 14.6.4+2016.11.05 14.6.0 14.2.9_2014.11.23 12.2.32
jspecies 1.2.1 1
k8 0.2.5 2 0.2.4
kaiju 1.7.4 3 1.9.0 1.6.2
kalign 3.3 7 3.3.54 3.3.12 3.3 2.03+20110620 2.03 2.0.4 3.3.5+git20230204.1.90747e3
kat 2.4.2 1
kent-tools 401 1
kma 1.3.6 4 1.4.142 1.4.13 1.4.12 1.4.11 1.3.28 1.3.23 1.3.10 1.2.21
kmc 3.1.1 3 3.2.2 3.2.1+git20220114.1.a68b0c9 3.2.1 3.1.1 2.3 2.0
kmergenie 1.7048 2 1.7051
kounta 0.2.3 1
kr-mutation-distances 2.0.2 1
kraken 1.1.1 6 1.1.13 1.12 0.10.5~beta 0.1 r70.2c5f7ce 32.368a837 1.1.1+git20210927.1.e75654f
kraken2 2.1.1 6 2.1.32 2.1.2+git20211210.1.4f648f5 2.1.23 2.1.1 2.0.8~beta
kssd 1.1 2 1.1
last 1133 6 1499 1491 14713 1460 1453 1447 1411 1268 1260 1256 1179 1060 963 921 712 393
lastz 1.04.03 6 1.04.225 1.04.15 1.04.032 HEAD 1.04.22+git20221105.1.e66c1da
legsta 0.5.1 1
libbigwig 0.4.4 8 0.4.75 0.4.6 0.4.43 9999
libccp4 6.5.1 7 8.0.02 6.5.15 6.4.6 6.4.5 r1861
libdivsufsort 2.0.1 13 2.0.112 HEAD 2.0.1.14
libgff 2.0.0 6 2.0.05 1.0
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
libsequence 1.9.8 2 1.9.8
light-assembler 1.0.0 1
lighter 1.1.2 5 1.1.24 9999
links-scaffolder 1.8.7 1
lofreq 2.1.3.1 2 2.1.5
lrsim 1.0 1
Project Selected Spr Newest Outdated Ignored
lsd2 1.7.1 1
magic-blast 1.3.0 1
maker 2.31.11 2 3.01.04
mapcaller 0.9.9.39 2 0.9.9.39
mash-genome-distance 2.2.2 5 2.33 2.2.2 2.12 2.0
masurca 3.4.1 3 4.1.02 4.0.1
maxbin2 2.2.7 1
mcl 14-137 9 22.282 22-282 14-1373 14_1372 14.1372 12-135 1.008.09.149
megahit 1.2.9 9 1.2.97 1.1.4 1.2.9+git20221006.1.769cfa2
meme-motif-discovery 5.1.0 4 5.5.42 5.5.1
metabat 2.15 5 2.153 0.32.4
metaphlan 1.7.8 2 4.0.6 4.0.4
mhap 2.1.3 3 2.1.32 2.1.1 1.6
mican 2019.11.27 2 2019.11.27
minced 0.4.2 4 0.4.22 0.3.2
minia 3.2.1 4 3.2.6 3.2.1+git20200522.4960a99 3.2.1 1.6906 1.6067 3.2.1.r12.g5b131b9
miniasm 0.3 7 0.35 0.2 2018-3-30 0.3+git20191007.1.ce615d1
minigraph 0.10 2 0.202
minimap 0.2 2 0.2
minimap2 2.17 9 2.265 2.25 2.245 2.22 2.17 2.15 2.24.r39.g5e72423
mir-prefer 0.24 1
mlst 2.19.0 2 2.23.0
mmdb2 2.0.20 6 2.0.224 2.0.1
mmtf-cpp 1.0.0 14 1.1.08 1.0.09
mosdepth 0.3.1 4 0.3.5 0.3.4 0.3.3+git20220502.1.556a460 0.3.32 0.3.2 0.3.1 0.2.3
mothur 1.44.3 6 1.48.04 1.47.0 1.44.3 1.42.1 1.39.5 1.36.1 1.31.2 1.27.0 1.41.21
mp-est 2.0 1
mpboot 1.1.0 2 1.2
mrbayes 3.2.7 9 3.2.7a4 3.2.75 3.2.6 3.2.2 3.1.2 HEAD
mreps 2.6.01 3 2.6.012
mummer 3.23 7 4.0.0rc1 3.233 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 12 5.1.03 5.12 3.8.15515 3.8.315
nanofilt 2.7.1 2 2.8.0 2.6.0+git20210224.1.76147c1 2.6.0
nanopolish 0.12.0 5 0.14.03 0.13.3 0.13.2 0.11.3 0.11.0 0.9.0 0.4.0 9999 0.14.0.r10.g21c75db
ncbi-blast+ 2.2.31 2.2.26 13 2.14.16 2.14.0 2.13.02 2.12.02 2.11.0 2.9.0 2.8.1 2.6.0 2.2.312 2.2.29 2.2.28 2.2.27 2.2.262
newick-utils 1.6 4 1.6 1.5.0 1.6-1.da121155
nextflow 20.07.1 5 23.04.32 23.04.1 22.04.5 21.10.6
nextgenmap 0.5.5 1
ngmaster 0.5.6 1
ngmerge 0.3 2 0.3
nonpareil-metagenomic-coverage 3.3.4 1
ntcard 1.2.2 3 1.2.22 9999 1.2.2+git20220105.1.9433d03
ntedit 1.3.4 1
nthits 0.0.1 1
ntjoin 1.0.6 1
nullarbor 2.0.20191013 1
nxtrim 0.4.3 3 0.4.32
oases 0.2.08 1
oma 2.4.2 1
orfm 0.7.1 3 0.7.12

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