Projects

200 project(s) on this page

Project Selected Spr Newest Outdated Ignored
abacas 1.3.1 3 1.3.12
abricate 1.0.1 1 1.0.1
abyss-explorer 2.1.0 1
adam 0.34.0 2 1.1.1
ale-assemby-likelihood-estimator 0.0.20180904 1
andi 0.13 4 0.143 0.13 0.12 0.10 0.9.6.1
any2fasta 0.4.2 1
apbspdb2pqr 1.5 1
aragorn 1.2.38 5 1.2.384 1.2.36
arcs 1.2.1 2 1.2.2
arks 1.0.4 1
art 20160605 7 2.0.1 2.0 1.16.2 1.16.1 1.13 1.10.1 0.9.02
artemis-genome-viewer 17.0.1 4 18.2.02 18.1.0 17.0.1.11 17.0.1 16.0.17 16.0.0
ascp 3.7.7 1
astral-species-tree 5.7.1 3 5.7.12
bali-phy 3.6.0 3 3.6.12 3.6.0 3.4.1 3.4
bam2fastx 1.3.0 1
bamm-bayesian 2.5.0 1
bandage 0.8.1 5 0.9.02 0.8.13
barrnap 0.9 4 0.92 0.82 0.7
bazam 1.0.1 1
bbtools 38.87 2 39.00 1.9
bcalm 2.2.2 3 2.2.3 2.2.1 2.2.0.r49.g890ea4a
beast2 2.6.3 5 2.7.02 2.6.7 2.6.6 2.6.4 2.6.3 2.6.0 2.5.1 2.4.7 2.4.4
berokka 0.2.3 1
bfc r181 3 0.2 g20150417
bifrost 1.0.5 2 1.0.5
biobloomtools 2.3.3 1
biomake 0.1.5 1
bioperl 1.007002 6 1.7.83 1.7.73 1.7.2 1.7.1 1.6.924 1.6.923 1.6.901 1.6.9 9999
blat 36 5 37 34 3.2.24 3.2.1 3.1.1 3.0.7 3.0.2 3 2.7.6 2.6.2
bmdca 0.8.12 2 0.8.13
bodr 10 14 1011 93 8
bonsai-taxonomic-analysis 0.3 1
bowtie 1.3.0 13 1.3.15 1.3.08 1.2.34 1.2.2 1.1.22 1.1.1 1.0.1 1.0.0 0.12.72
bracken 2.6.0 2 1.0.0
breseq 0.35.4 2 0.33.2
busco 5.0.0 4 5.4.3 5.2.2 5.0.0 4.1.3 3.0.0
bwa-mem2 2.0 3 2.0pre1 r183.d43752d
cannoli 0.12.0 1
canu 1.9 7 2.22 2.1.1 2.02 1.9 1.82 1.7.1 1.6 r10451.g6c4193847
cap3 2015-02-11 3 20091029 2015-02-11
cd-hit 4.8.1 11 4.8.18 4.6.82 4.6.62 4.6.4 4.6.1-2012-08-27 4.5.7
centrifuge 1.0.3 3 1.0.4 1.0.3 1.0.3~beta
circlator 1.5.5 2 1.5.6 1.5.5 1.4.1
circos 0.69-9 7 0.69_9 0.69.9 0.69-9 0.69.6 0.69-6 0.69.4 0.69 0.66 0.64 0.552 0.49
clipper4coot 2.1.20180802 1
clonalframeml 1.12 3 1.122 1.11
clustal-omega 1.2.4 12 1.2.410 1.2.2 1.2.1
clustalw 2.1 15 2.112 1.832 2.1+lgpl 2.1+lgpl
Project Selected Spr Newest Outdated Ignored
cluster-picker 1.2.5 1
consel 0.20 2 0.1
crumble 0.8.3 1
cutadapt 3.3 4 3.3 2.10 2.1 1.14
das-tool 1.1.2 1
dehomopolymerate 0.4.0 1
delly 0.8.5 5 1.1.53 1.1.3 0.9.12 0.8.72 0.8.3 0.8.2 0.8.1
dida 1.0.1 3 1.0.40 1.0.4 1.0.4.r5.gbcb26e5 4.3.0.0 4.2.9.0 4.2.8.5 4.2.8.1 4.2.8.0 4.2.7.0 4.2.6.0 4.2.5.0 4.2.4.0 4.2.3.0 4.2.2.0 4.2.1.0 4.2.0.0 4.1.5.0 4.1.4.0 4.1.3.6 4.1.3.0 4.1.2.6 4.1.2.0 4.1.1.0 4.0.5.2 3.9.1.0 3.7.8.8
discovardenovo 52488 2 52488
disty 0.1.0 2 0.1.0
dsh-bio 2.0.3 1
dssp 3.1.4 9 4.0.5 4.0.42 4.0.3 4.0.0 3.1.44 3.0.11 3.0.02 2.2.13
dwgsim 0.1.12 3 0.1.14 0.1.13 0.1.122 0.1.11 r159.39a1bbb
e-mem 1.0.1 4 28oct2015 1.0.12
easel 0.46 1
edirect 13.8 2 13.3.20200128
elph 1.0.1 5 1.0.14
ema 0.6.2 1
emboss 6.6.0 15 6.6.011 6.5.7 6.4.0 6.3.1 6.0.1
epa-ng 0.3.8 1
exabayes 1.5 3 1.5.12 1.4.1
exonerate 2.4.0 11 2.4.08 2.2.03
express-rna-seq 1.5.3 4 1.5.32 1.5.1
falco 0.2.4 2 0.31.0 0.29.1 0.30.0.r0.gbb811332
faqcs 2.10 1
fasta 36.3.8h 7 36.3.8h.2020.05.04 36.3.8h.2020-02-11 36.3.8h2 36.3.8g3 36.3.8 36.3.5e 21.1.1
fastani 1.32 3 1.332
fastp 0.20.1 9 0.23.26 0.23.1 0.20.13 0.20.03 0.19.6
fastq-pair 1.0 3 1.02
fasttree 2.1.11 7 2.1.113 2.1.104 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq 1.1 1
fermi-lite 0.1 2 0.1 0.1+git20190320.b499514
figtree 1.4.4 6 1.4.44 1.4.32 1.4.2 1.4 1.3.1 1.4.4.14
filtlong 0.2.0 5 0.2.12 0.2.0-1.d1bb46d 0.2.02
finch-rs 0.3.0 2 0.4.3
flash-seq 1.2.11 5 1.2.114
flowcraft 1.4.1 1
flye 2.8.3 2 2.9.1
fraggenescan 1.31 3 1.31 1.30
freebayes 1.3.2 8 1.3.65 1.3.53 1.3.2 1.3.1 1.2.0 1.1.0
fwdpp 0.8.1 1
gappa-phylogenetic-analysis 0.6.1 1
gatk 4.2.0.0 7 4.2.6.14 4.0.6.0 3.8-1 2.4 9999
gblocks 0.91b 4 0.91b3
gemma 0.98.4 5 0.98.52 0.98.4 0.98.32 0.98.1
genome-painter 0.0.8 2 0.0.8
gepard 1.40 1
gfakluge 1.1.2 1
gfalint 1.0.0 1
gfaview 0.0.53 1
Project Selected Spr Newest Outdated Ignored
gffcompare 0.12.1 4 0.12.6 0.12.2 0.10.15-1.be56ef4
ghostz 1.0.2 2 1.0.2
gmap-gsnap 2019-09-12 3 2019.03.15 2021-03-08
groot 1.1.2 3 18.8 1.0.0.r57.g05fe640
gzstream 1.5 5 1.54 1.5+git20171107.9a20658
harvest-tools 1.3 2 1.3
hh-suite 3.3.0 1
hisat2 2.2.1 9 2.2.17 2.2.0 2.1.0 2.0.5 2.2.1.r8.g49aa20c
hmmer 2.4i 17 3.3.211 3.33 3.2.1 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.23
hssp 3.1.5 3 3.1.5 3.0.10
humann2 0.11.1 1
idba 1.1.3 5 1.1.34 1.1.2 9999
indel-seq-gen 2.1.03 2 2.1.03
indelible 1.03 3 1.032
infernal 1.1.3 8 1.1.44 1.1.32 1.1.22 1.1.1 1.1~rc4 1.0.22
iqtree 1.6.12 7 2.2.0.4 2.2.0 2.1.2 2.0.7 2.0.6 1.6.122 1.6.9 1.6.1 1.5.3 1.3.11.1
iqtree2 2.0.7 2 2.1.3
ispcr 33 1
iva 1.0.9 2 1.0.11 1.0.9 1.0.8
ivar 1.3 3 1.3.12 1.3
jellyfish-k-mer 2.3.0 8 2.3.06 2.2.10 2.2.8 2.2.7 2.2.6 2.2.4 2.1.4 1.1.122 1.1.11 1.1.10 1.1.2
jmol 14.31.34 17 14.32.762 14.32.752 14.32.74 14.32.732 14.32.64 14.32.61 14.32.55 14.32.45 14.32.22 14.32.3 14.31.54 14.31.49 14.31.442 14.31.382 14.31.35 14.31.34 14.31.20 14.31.18 14.31.8 14.31.0 14.30.0 14.29.54 14.29.52 14.27.2 14.6.4+2016.11.05 14.6.02 14.2.9_2014.11.23 12.2.32 12.2.27 12.2.2 12.0.45
jspecies 1.2.1 1
k8 0.2.5 2 0.2.4
kaiju 1.7.4 3 1.6.3 1.6.2
kalign 3.3 4 3.3.22 3.3.1 3.3 2.03+20110620 2.03 2.0.4
kat 2.4.2 2 2.4.2 9999
kent-tools 401 1
kma 1.3.6 3 1.4.32 1.3.28 1.3.23 1.3.10 1.2.21
kmc 3.1.1 3 3.2.1 3.1.1 2.3 2.0
kmergenie 1.7048 3 1.7048 1.7044
kounta 0.2.3 1
kr-mutation-distances 2.0.2 1
kraken 1.1.1 7 2.1.1 1.1.13 1.12 1.0 0.10.5~beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.1.1 5 2.1.22 2.1.13 2.0.8~beta
kssd 1.1 2 1.1
last 1133 7 14113 1407 1389 1282 1268 1260 1256 11793 1060 963 921 830 712 490 393 299 230 189
lastz 1.04.03 5 1.04.222 1.04.153 1.04.032
legsta 0.5.1 1
libbigwig 0.4.4 7 0.4.73 0.4.62 0.4.43 9999
libccp4 6.5.1 8 6.5.16 6.4.62 6.4.5 6.4.0_rc1 r1861
libdivsufsort 2.0.1 11 2.0.110
libgff 2.0.0 6 2.0.05 1.0
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
libsequence 1.9.8 2 1.9.8
light-assembler 1.0.0 1
lighter 1.1.2 5 1.1.24 9999
links-scaffolder 1.8.7 1
lofreq 2.1.3.1 2 2.1.5
lrsim 1.0 1
Project Selected Spr Newest Outdated Ignored
lsd2 1.7.1 1
magic-blast 1.3.0 1
maker 2.31.11 2 3.01.03
mapcaller 0.9.9.39 2 0.9.9.39
mash-genome-distance 2.2.2 5 2.33 2.2.2 2.12 2.0 1.1.1
masurca 3.4.1 3 4.0.9 4.0.1
maxbin2 2.2.7 1
mcl 14-137 9 14-1373 14_1372 14.1372 12.135 12-135 11-294 08.312 1.008.09.149
megahit 1.2.9 7 1.2.95 1.1.4
meme-motif-discovery 5.1.0 5 5.4.1 5.3.0 5.2.0 4.11.2_p2
metabat 2.15 5 2.153 0.32.4
metaphlan 1.7.8 2 4.0.0
mhap 2.1.3 2 2.1.3 2.1.1 1.6
mican 2019.11.27 2 2019.11.27
minced 0.4.2 4 0.4.2 0.3.22
minia 3.2.1 4 3.2.6 3.2.1+git20200522.4960a99 3.2.1 1.6906 1.6088 1.6067 3.2.1.r12.g5b131b9
miniasm 0.3 6 0.34 0.2 2018-3-30
minigraph 0.10 2 0.13
minimap 0.2 2 0.2
minimap2 2.17 9 2.247 2.23 2.22 2.20 2.172 2.15 2.14 2.17.r46.gc9874e2
mir-prefer 0.24 1
mlst 2.19.0 1
mmdb2 2.0.20 6 2.0.222 2.0.203 2.0.1
mmtf-cpp 1.0.0 14 1.0.013
mosdepth 0.3.1 4 0.3.33 0.3.2 0.3.12 0.2.3
mothur 1.44.3 6 1.48.03 1.47.0 1.46.1 1.44.3 1.42.1 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21
mp-est 2.0 1
mpboot 1.1.0 2 1.1.1
mrbayes 3.2.7 8 3.2.7a4 3.2.74 3.2.6 3.2.3 3.2.2 3.1.23
mreps 2.6.01 3 2.6.012
mummer 3.23 7 4.0.0rc1 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 12 5.13 3.8.15515 3.8.315
nanofilt 2.7.1 2 2.6.0
nanopolish 0.12.0 5 0.14.02 0.13.3 0.13.2 0.11.3 0.11.1-1.6331dc4 0.11.0 0.10.2 0.9.0 0.5.0 0.4.0 9999 0.14.0.r6.g07cb03d
ncbi-blast+ 2.2.31 2.2.26 15 2.13.06 2.12.04 2.11.04 2.9.02 2.8.12 2.7.1 2.6.02 2.2.313 2.2.30 2.2.292 2.2.28 2.2.27 2.2.262 2.2.25
newick-utils 1.6 4 1.6 1.5.0 1.6-1.da121155
nextflow 20.07.1 5 22.04.52 22.04.3 21.10.6 21.04.1
nextgenmap 0.5.5 1
ngmaster 0.5.6 1
ngmerge 0.3 2 0.3
nonpareil-metagenomic-coverage 3.3.4 1
ntcard 1.2.2 3 1.2.22 9999
ntedit 1.3.4 1
nthits 0.0.1 1
ntjoin 1.0.6 1
nullarbor 2.0.20191013 1
nxtrim 0.4.3 3 0.4.32
oases 0.2.08 1
oma 2.4.2 1
orfm 0.7.1 3 0.7.12

Legend: