Projects

157 project(s) on this page

Project Selected Spr Newest Outdated Ignored
aaindex 9.1 1 9.1
abyss 2.0.3 2.0.2 8 2.1.56 2.1.0 2.0.3 2.0.22 1.9.0 1.5.2 1.3.6 1.3.2 0.3
allpathslg 52488 1 52488
amap 5.4 2.2 14 5.411 5.23 2.2 0.28
amos 3.1.0 2 3.1.02
ariadne 1.3 1 1.3
augustus 2.5.5 4 3.3.22 3.3.1 3.3 3.2.3 2.5.52
bamtools 9999 2.5.1 7 2.5.16 2.4.12 2.4.0 2.3.0 20110606 9999
bcftools 1.9 1.5 12 1.912 1.8 1.7 1.5 1.3.1 1.2
bedtools 2.26.0 13 2.28.04 2.27.18 2.26.04 2.25.0 2.21.0 2.18.0 2.17.0 2.15.0 2.14.3 v2.27.1.r0.g1de417b9
bfast 0.7.0a 5 0.7.0a5
biogrep 1.0 1 1.0
biopandas 0.2.1 1 0.2.1
bioperl 9999 1.6.9 5 1.0070022 1.7.4 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 9999
bioperl-db 9999 1.6.9 1 1.6.9 9999
bioperl-network 9999 1.6.9 1 1.6.9 9999
bioperl-run 9999 1.6.9 3 1.7.3 1.7.2 1.7.1 1.6.92 20161220 9999
biopython 1.73 1.71 1.68 3 1.71 1.682 1.66
bioruby 1.5.2 1.5.1 2 1.5.2 1.5.1
biosql 1.0.1 1 1.0.1
blat 34 4 36 35 34 3.2.19
bowtie 1.1.2 9 1.2.2_p12 1.2.22 1.1.24 1.1.1 1.0.1 1.0.02 0.12.72 v2.2.9.r9.g9c90266
bowtie2 2.2.9 10 2.3.5.15 2.3.5 2.3.4.33 2.3.4.2 2.3.4.12 2.3.0 2.2.9 2.2.6 2.2.4 2.1.02
bwa 0.7.16a 12 0.7.179 0.7.16a 0.7.153 0.7.122 0.7.10 0.7.5a 0.6.22 0.6.1 0.5.9
cd-hit 4.6.6 9 4.8.13 4.6.82 4.6.62 4.6.52 4.6.42 4.6.1 4.5.7
circos 0.55 5 0.69.6 0.69-6 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clustal-omega 1.2.4 9 1.2.49 1.2.1
clustalw 2.1 1.83 12 2.112 1.83
clustalw-mpi 0.13 2 0.15 0.13
clustalx 2.1 9 2.19
consed 29 2 29 27.0
cutg 160 1 160
dcmtk 3.6.3 20 3.6.412 3.6.33 3.6.24 3.6.1_20170228 3.6.13 3.6.04 3.5.4 3.6.1_20170228.43.gef9173b95 3.6.4.20190212
dialign-tx 1.0.2 2 1.0.22
dialign2 2.2.1 1 2.2.1
diya 1.0_rc4 1 1.0_rc4
elph 1.0.1 5 1.0.15
embassy 6.6.0 2 6.6.02
embassy-cbstools 1.0.0.660 1 1.0.0.660
embassy-clustalomega 1.1.0.660 1 1.1.0.660
embassy-domainatrix 0.1.660 2 0.1.6602 0.1.650 0.1.0
embassy-domalign 0.1.660 2 0.1.6602 0.1.650 0.1.0
embassy-domsearch 0.1.660 2 0.1.6602 0.1.650 0.1.0
embassy-emnu 1.05.660 1 1.05.660
embassy-esim4 1.0.0.660 1 1.0.0.660
embassy-hmmer 2.3.2.660 1 2.3.2.660
embassy-iprscan 4.3.1.660 1 4.3.1.660
embassy-meme 4.7.660 1 4.7.660
embassy-mse 3.0.0.660 1 3.0.0.660
embassy-phylipnew 3.69.660 1 3.69.660
Project Selected Spr Newest Outdated Ignored
embassy-signature 0.1.660 1 0.1.660
embassy-structure 0.1.660 1 0.1.660
embassy-topo 2.0.660 1 2.0.660
embassy-vienna 1.7.2.660 1 1.7.2.660
emboss 6.6.0 13 6.6.010 6.5.7 6.4.0 6.3.1 6.0.1
eugene 4.1d 1 4.1d
exonerate 2.2.0 10 2.4.07 2.2.04
express-rna-seq 1.5.1 3 1.5.2 1.5.12
fasta 36.3.5e 5 36.3.8g3 36.3.8 36.3.5e 21.1.1
fasttree 2.1.8 6 2.1.105 2.1.9 2.1.82 2.1.7 2.1.4
finchtv 1.3.1 2 1.3.12
foldingathome 7.5.1 2 7.5.12
gatk 9999 2.4 4 4.0.11.02 4.0.7.0 4.0.6.0 2.4 9999
gbrowse 2.48 2 2.56 2.54 2.48 2.42
gibbs 3.1 1 3.1
glimmer 3.02b 3.02 3 3.02b2 3.02 2.13
glimmerhmm 3.0.1 1 3.0.1
gmap 2015.12.31.5 3 2019 2017 2015.12.31.5 2015.09.21 2015 2014 2012 2011
goby 1.9.8.1 1.9.7.3 2 1.9.8.1 1.9.7.3 1.1
goby-cpp 2.0.1 1.9.8.1 1.9.7.3 1 2.0.1 1.9.8.1 1.9.7.3
hmmer 3.1_beta2 2.3.2 14 3.2.19 3.1b22 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i2 2.3.23
htseq 9999 0.9.1 3 0.11.2 0.10.0 0.9.13 0.6.1p1 0.5.4p3 9999
htslib 1.9 1.5 11 1.911 1.7 1.5 1.3.2 1.2.1 1.1 0.2.0rc3
iedera 1.05 1 1.05
infernal 1.0.2 6 1.1.25 1.1.1 1.1rc4 1.0.22
iqpnni 3.3.2 1 3.3.2
java-picard 1.103 2 2.10.3 2.3.0 1.113 1.103
kalign 2.03 3 2.032 2.0.4
kallisto 9999 0.43.1 7 0.46.0 0.45.12 0.45.02 0.44.0 0.43.12 9999
lagan 2.0 4 2.04
last 299 230 4 9632 938 926 921 830 712 490 393 299 230 189
libgenome 1.3 3 1.3.12 1.3 1.3.11svn20110227.4616
libgtextutils 0.6.1 8 0.76 0.6.2 0.6.1 0.62
libmems 9999 1.6_p1 2 1.6.0 9999 1.6_p1
libmuscle 3.7 3 3.73
mafft 7.305 7.215 7.050 8 7.4272 7.4072 7.402 7.397 7.394 7.310 7.307 7.305 7.273 7.271 7.266 7.215 7.205 7.123 7.050 6.850
maq 0.7.1 3 0.7.13
maqview 0.2.5 2 0.2.52
mcl 14.137 12.135 08.312 8 14.1372 14-1372 14_137 14 12.135 12 11 09_308 08.312 1.008.09.149
meme-motif-discovery 4.11.2_p2 4 5.0.42 4.12.0 4.11.2_p2
mira 4.0.2 3 4.9.6 4.9.5 4.0.22 4.0 3.4.0.1 0.2.1_beta
mosaik 2.2.30 2 2.2.302
mothur 1.27.0 5 1.42.12 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2 1.41.21 1.42.1.3
mrbayes 3.1.2 7 3.2.7 3.2.63 3.2.3 3.2.2 3.1.24
mummer 3.23 6 3.234 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.31 9 3.8.15514 3.8.316
ncbi-tools 2.2.26 2 20080302 2.2.26
newick-utils 1.6 4 1.63 1.5.0
njplot 2.3 2 2.4 2.32
pals 1.0 1 1.0
Project Selected Spr Newest Outdated Ignored
paml 4.4c 8 4.9i2 4.9h4 4.9g 4.9e 4.8 4.7 4.5 4.4e 4.4c
perl:bio-db-hts 3.01 2.11 2 3.01 2.11
perl:librg-utils-perl 1.0.43 1 1.0.43
phrap 1.080812 2 1.090518 1.080812
phred 071220 2 071220 0.020425.c
phylip 3.696 3.69 8 3.6974 3.6963 3.695 3.694
phyml 2.4.5 6 3.3.201903212 3.3.201806213 3.3.20180214 3.3.20170530 3.2.0 2.4.5 r121.ab59039 20120412 20110919
piler 1.0 3 1.1.1 1.0 0
pilercr 1.0 2 1.06 1.0
plink 1.90_pre140514 1.07 7 1.90_pre140514 1.077
poa 2 2 2.0 2
prank 140603 5 170427 150803 140603 100802 0.0.170427 0.0.150803 0.0.140110
primer3 2.3.7 9 2.4.04 2.3.73 2.3.65 2.3.1 2.2.3
prints 39.0 1 39.0
probcons 1.12 3 1.123
prodigal 2.6.3 7 2.6.36 2.6.2 2.6.1 2.6.3.2
profnet 1.0.22 2 1.0.222 1.0.21
profphd 1.0.40 1.0.39 2 1.0.42 1.0.402 1.0.39 1.0.38
profphd-utils 1.0.10 2 1.0.102 1.0.8
prosite 2017.02 1 2017.02
psipred 3.5 3.4 3.3 3.2.1 1 3.5 3.4 3.3 3.2.1
pysam 0.12.0.1 2 0.15.2 0.12.0.1
python:intervaltree 2.1.0 12 3.0.27 2.1.07 9999
qrna 2.0.3c 1 2.0.3c
raxml 7.2.6 7 8.2.125 8.2.11 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
rebase-enzyme 1901 1810 1806 1803 1704 1703 1702 1701 1 1810 1806 1803 1704 1703 1702 1701
recon 1.08 1 1.08
repeatmasker 4.0.1 4 4.0.8 4.0.7 4.0.5 4.0.1
repeatmasker-libraries 20120418 1 20120418
rmblast 1.2 3 2.2.282 1.2
rnaview 20040713 1 20040713
samtools 1.9 1.5 0.1.20 15 1.912 1.7 1.5 1.3.12 0.1.202 0.1.196 0.1.183
seaview 4.6 4.5.4 4.3.5 8 4.76 4.6.4 4.6.2.1 4.6.1.2 4.62 4.5.4.8 4.5.4 4.5.3.1 4.4.2 4.3.5 4.3.1
seqan 9999 2.4.0 2.2.0 1.4.2 9 2.4.08 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 9999 r628.35e4fba r.fcad60a
shrimp 2.2.3 2.0.1 2 2.2.32 2.0.1
sibsim4 0.20 3 0.203
sim4 20030921 7 201210102 200309213 2012_10_10 2003.09.21 0.0.20121010 0.0.20030921
star 2.5.3a 18 2.7.1a3 2.7.0a 2.5.3a 1.62 1.5final 1.5.36 1.5.25 1.5.12 1.52 1.5a89
stride 20011129 4 20030804 20011129 3.1 1.17.82
t-coffee 11.00 4 12.00.7fb08c2 11.00.8cbe4862 11.00 10.00.r1613 9.03 8.99
tophat 2.1.1 6 2.1.2 2.1.15 2.1.0 2.0.13 2.0.10 2.0.9
transfac 3.2 1 3.2
tree-puzzle 5.2 5 5.25
treeviewx 0.5.1 3 0.5.13 0.5.1git20100823.7
trf-tandem-repeats-finder 4.04 3 4.09 4.07b 4.04
trnascan-se 1.31 5 2.0.3 2.0.04 1.31 1.3.1
uchime 4.2.40 1 4.2.40
ucsc-genome-browser 260 1 260
unafold 3.8 1 3.8
update-blastdb 12.0.0 1 12.0.0
Project Selected Spr Newest Outdated Ignored
vaal 46233 1 46233
vcftools 0.1.14 11 0.1.168 0.1.154 0.1.142 0.1.12 0.1.112 0.1.7
velvet 1.2.10 1.0.18 6 1.2.106 1.1.07 1.0.18
vienna-rna 2.1.8 2.1.1 1 2.1.8 2.1.1
wgs-assembler 7.0 2 8.3rc2 7.0
wise2 2.4.0_alpha 10 2.4.16 2.4.0_alpha 2.2.05
yass 1.14 3 1.142 0.1.0

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