Projects

200 project(s) on this page

Project	Selected	Spr	Newest	Outdated	Ignored
abacas	1.3.1	4	1.3.13
abgd	2011_06_10	1	2011_06_10
abpoa∗	1.5.4	6	1.5.45	1.5.32 1.5.2 1.5.1 1.4.1	HEAD
abyss	2.3.10	9	2.3.106	2.3.7 2.3.5 2.3.4 2.3.1 2.2.5 2.2.4 2.1.52 2.0.2 1.9.0 1.3.6 0.3	HEAD
adapterremoval	2.3.4	5	2.3.44	2.3.32 2.3.2 2.3.1 2.2.3 2.2.2
aevol∗	9.1	2	9.1	5.0 4.4 4.2
agat	1.4.2	1	1.4.2
alevin-fry∗	0.11.2	2	0.11.22
aliview	1.30	2	1.30	1.28 1.27
allelecount	4.3.0	2	4.3.02	4.2.1
amrfinderplus	4.0.23	1	4.0.23
andi	0.14	7	0.145	0.132 0.12 0.9.6.1	0.14.3
any2fasta	0.4.2	4	0.4.24
archrepo2	2020.04.18	1			0.5.r23.g954068b
argparse-p-ranav∗	3.2	12	3.210	3.14 3.05 2.93 2.6 2.5 2.4 2.3 2.2 2.1	HEAD
arlequin	3.5.2.2	1	3.5.2.2
armadillo	14.4.3	28	14.4.37	14.4.2 14.4.15 14.2.32 14.2.22 14.2.12 14.0.3 14.0.22 14.0.1 12.8.3 12.8.22 12.8.1 12.6.72 12.6.64 12.6.4 12.6.3 12.6.22 12.4.2 12.4.0 12.2.03 11.4.32 11.4.23 11.0.1 10.8.24 10.7.5 10.7.4 10.7.32 10.7.1 10.7.0 10.2.0 10.1.2 9.900.6 9.900.4 9.800.4 9.600.6 9.600.5 9.200.7.1 9.200.7 8.400.0 8.100.0 6.700.7 6.500.5 4.550.2 4.200.0
artemis-genome-viewer	18.2.0	4	18.2.02	18.1.0 17.0.1.11 17.0.12 16.0.17 16.0.0
asap-bioinformatics	2025_04_03	1
aster-species-tree-estimator	1.22	1
astral-species-tree	5.7.1	4	5.7.13
augustus-gene-prediction	3.5.0	6	3.5.05	3.4.02 3.3.3 3.3.2 3.3 2.5.5	HEAD
avida	2.14.0	4	2.14.0	2.12.42 0_git20190813
avogadro2∗	1.100.0	17	1.100.014	1.99.06 1.98.12 1.97.05 1.95.12 1.93.03 1.91.0 1.90.0	1.93.0.r453.87101bc
bamm-bayesian∗	2.5.0	3	2.5.03
bamtools	2.5.3	10	2.5.36	2.5.26 2.5.1 2.4.1 2.4.0	9999 2.5.2.r4.g2bd8699 HEAD
base-bio	1	1
bayarea	1.0.3	1	1.0.3
bayesass	3.0.5.7	1
bayestraits	4.1.3	2	4.1.3	3.0.5
bbmap∗	39.28	6	39.28	39.20 39.15 39.08 39.06 39.013 38.95 38.90 38.87 38.79 38.63
bcftools∗	1.22	16	1.226	1.218 1.204 1.192 1.18 1.17 1.163 1.15.1 1.132 1.12 1.11 1.10.2 1.10 1.92 1.7 1.2	1.17.r18.g60c65eb9
beagle-sequence-likelihood	4.0.1	4	4.0.13	3.1.22 2.1.2+20171110
beast∗	1.10.4	5	1.10.42	0.7.8 0.7.1 0.6.4	r9324.d92270e76 HEAD
beast2	2.7.7	5	2.7.72	2.7.6 2.7.4 2.7.3 2.6.6 2.6.32 2.6.0 2.5.1 2.4.7 2.4.4
bedops	2.4.42	7	2.4.423	2.4.414 2.4.40 2.4.392 2.4.37 2.4.35 2.4.262
bedtools	2.31.1	15	2.31.112	2.31.03 2.30.02 2.27.1 2.26.02 2.25.0 2.18.0 2.17.0 2.15.0
bio-tbtools	2.224	1	2.224
bioarchlinux-keyring	2022.04.16	1
bioarchlinux-mirrorlist	2024.12.10	1
bioarchlinux-packages	0.2.8	1
biolibc	0.2.7	3	0.2.72	0.2.6.4
bionj	1997	1	1997
blake3∗	1.8.2	33	1.8.220	1.8.15 1.7.04 1.6.1 1.5.53 1.5.43 1.5.32 1.5.16 1.5.05 1.4.1 1.4.0 1.3.33 1.3.15 1.2.02 0.3.8	git
bowtie∗	1.3.1	12	1.3.111	1.3.04 1.2.32 1.2.2 1.1.2 1.0.0 0.12.7
bowtie2∗	2.5.4	13	2.5.48	2.5.3 2.5.23 2.5.15 2.5.0 2.4.5 2.4.43 2.4.2 2.4.1 2.3.5.1 2.3.4.32 2.3.4.1 2.2.6 2.1.02	2.5.4.r4.gb7e97e9
bpp	4.8.4	1
bracken	3.1	3	3.1	2.9 2.6.0
btllib	1.7.5	5	1.7.54	1.7.3 1.4.10
bucky	1.4.4	2	1.4.42
Project	Selected	Spr	Newest	Outdated	Ignored
bustools	0.45.1	5	0.45.12	0.45.02 0.44.1 0.43.22 0.42.0 0.41.0 0.40.0
calamares-config	2023.06.13	1
canu	2.3	6	2.3	2.24 2.0 1.92 1.8 1.6	2.2.r162.gc61ebbb7a
catsequences	1.5	2	1.5
cctz	2.5	12	2.53	2.410 2.35 2.2
cd-hit∗	4.8.1	11	4.8.110	4.6.8 4.6.6 4.6.4 4.6.1-2012-08-27
centrifuge	1.0.4.2	6	1.0.4.23	1.0.4.1 1.0.4 1.0.32 1.0.3~beta
chopper	0.10.0	1	0.10.0
cimfomfa∗	22.273	4	22.2732	21-3612
circexplorer	1.1.10	1
ckbcomp∗	1.237	6	1.2372	1.236 1.234 1.2312 1.230 1.227 1.2263 1.2232 1.221 1.220 1.2192 1.2102 1.2072 1.205 1.196
classic-delta∗	2.25g	1	2.25g
classytk	1.1.0	1
clustal-omega∗	1.2.4	12	1.2.411	1.2.2 1.2.1
clustalv∗	1991	1
clustalw∗	2.1	15	2.113	1.832	2.1+lgpl 2.1+lgpl
clustalx∗	2.1	8	2.17		2.1+lgpl 2.1+lgpl
codonw	1.4.4	3	1.4.43
coin-or-symphony	5.7.2	5	5.7.24	5.7.1 5.6.173 5.6.16 5.6.1 5.5.6
cpc2∗	1.0.1	1
cramino	1.1.0	2	1.1.0	0.9.0
cufflinks	2.2.2.20190706.162801	6	2.2.2.20190706.162801	2.2.1.89 2.2.15 2.1.1	2.2.1.r89.gdc3b0cb
cutadapt∗	5.1	5	5.1	4.9 4.0 3.3 1.14
cytoscape	3.10.3	6	3.10.35	3.10.2 3.10.1 3.10.0 3.9.1 3.6.1
decenttree	1.0.0	1
devtools-bio	2023.05.23	1
devtools-bioarchlinux∗	2024.12.16	1
dnarates	1.1.0	2	1.1.02
easycodeml	1.41	1	1.41
edlib∗	1.2.7	6	1.2.75	1.2.6	2021-08-20
emboss∗	6.6.0	15	6.6.013	6.5.7 6.4.0 6.0.1
estscan	3.0.3	2	3.0.32
ev-view	20160216.161212	1	20160216.161212
evs	20161229.215801	1	20161229.215801
exabayes	1.5.1	3	1.5.12	1.5
examl	3.0.22	3	3.0.223	3.0.21 3.0.20
exonerate	2.4.0	11	2.4.010	2.2.02
extral∗	2.0.0	1
fasta-ushuffle	0.2	1
fastahack∗	1.0.0	5	1.0.05
fastani	1.34	6	1.344	1.33 1.32
fastdnaml	1.2.2	6	1.2.25		1.2.2_p10
fastfetch-logo	0.0.1	1
fastme	2.1.6.3	4	2.1.6.33	2.1.5.1
fastp	1.0.1	10	1.0.1	0.26.02 0.24.12 0.24.03 0.23.44 0.23.3 0.23.23 0.22.0 0.20.12 0.20.0 0.19.6
fastq-trim	0.1.4	3	0.1.42	0.1.3
fastqc	0.12.1	10	0.12.17	0.11.94 0.11.8 0.11.5 0.11.4 0.10.1
fastuniq	1.1	2	1.12
feelnc	0.2.1	1
figtree	1.4.4	7	1.4.46	1.4.3 1.4.2 1.4	1.4.4.14
Project	Selected	Spr	Newest	Outdated	Ignored
fiji	20250514.1117	5	20250514-11172	20250408-1717 20250302.2217 20240614-2117 20230801_1717 20201104-1356
fiji-plugin-morpholibj∗	1.6.4	1	1.6.4
flair∗	2.2.0	2	2.2.0	1.6.4
free-delta∗	4.0.7	1	4.0.7
freec	11.6	1	11.6
fsplit	2016.08.23	2		5.5
garli	2.1	3	2.12 2.01
garlic	1.6	9	1.68	1.5
gatb-core	1.4.2	3	1.4.22	1.4.1+git20191209.9398f28 1.4.1+git20181225.44d5a44
gatk	4.6.2.0	6	4.6.2.02	4.6.1.03 4.5.0.02 4.4.0.0 4.3.0.0 4.2.0.0 3.8-1
gblocks	0.91b	4	0.91b4
gde∗	2.2.1	2		0.09
generax	2.1.3	2	2.1.3	2.0.4	master
getorganelle	1.7.7.1	2	1.7.7.1	1.7.7.0
gffcompare∗	0.12.6	5	0.12.62	0.12.2 0.12.1 0.10.15-1.be56ef4
gffread∗	0.12.7	8	0.12.77	0.12.1 0.11.7 0.9.12-1.ba7535f
glimmerhmm	3.0.4	2	3.0.4	3.0.1
google-crc32c∗	1.1.2	4	1.1.24		1.1.2
graphite-gtk-theme∗	2024.07.25	2		2024.07.15 2024-07-15 2024-04-28 2023-05-17 2022-09-02	2024.07.15.r18.g52d8e00
graphite-kde-theme∗	2024.10.27	2		2023-10-25 2022-02-08
gri	2.12.27	10	2.12.273	2.12.26 2.12.237 2.12.7	2.12.23.r20.gd9969d1
gsalign	1.0.22	1
gw	1.2.3	3	1.2.33
hifiasm	0.25.0	1	0.25.0
hisat2	2.2.1	9	2.2.19	2.1.0	2.2.1.r55.g5086938
hmmer	3.4	17	3.411	3.3.25 3.3 3.2.1 3.1beta2 3.1b2 3.1_beta2 3.1b1 3.02 3 2.4i2 2.3.23
hopscotch-map∗	2.3.1	3	2.3.13	2.3.0 2.2.1
htslib∗	1.22	20	1.227	1.2111 1.202 1.19.13 1.194 1.18 1.172 1.162 1.15.1 1.14 1.132 1.12 1.112 1.10.2 1.10 1.93 1.7 1.2.1▲ 0.2.0~rc3▲	1.17.r16.g93434e04
hybpiper	2.3.2	2	2.3.2	2.1.8
ibs	1.0.3_unix_20170614	1
idba	1.1.3	5	1.1.35	1.1.2	9999
igv∗	2.19.4	9	2.19.43	2.18.5 2.17.4 2.17.3 2.16.23 2.16.03 2.15.1 2.12.0 2.9.2 2.6.3 2.4.17 2.4.6 2.3.68 2.3.14
imagej2∗	2.16.0	1	2.16.0
infernal	1.1.5	8	1.1.55	1.1.42 1.1.32 1.1.2 1.1.1 1.1~rc4 1.0.22
ipyrad∗	0.9.102	1
iqtree∗	3.0.1	7	3.0.1	2.4.0 2.3.6 2.3.4 2.2.2.72 2.2.2.4 2.2.0.4 2.0.7 1.6.123 1.6.9 1.6.1 1.3.11.1
iqtree-mpi∗	3.0.1	1	3.0.1
iwidgets∗	4.1.1	13	4.1.110	4.12 4.1.0 4.0.22 4.0.12
jags∗	4.3.2	12	4.3.29	4.3.14 4.3.02 4.1.0 3.4.0
jane	4.01	1	4.01
jasp-desktop∗	0.19.3	2	0.19.32	0.19.1 0.18.3
javafx-scenebuilder∗	24.0.0	2	24.0.0	21.0.0
jellyfish-k-mer	2.3.1	8	2.3.14	2.3.05 2.2.10 2.2.8 2.2.4 1.1.122 1.1.11 1.1.10
jml	1.3.1	1	1.3.1
junest	7.4.10	2	7.4.10		7.4.2.r2.ba0ddcc
kaks-calculator	3.0	3	3.0	2.02 1.2
kallisto	0.51.1	10	0.51.15	0.50.13 0.50.0 0.48.03 0.46.22 0.46.1
kma	1.5.1	4	1.5.1	1.5.0 1.4.21 1.4.15 1.4.14 1.4.11 1.3.28 1.3.23 1.3.10 1.3.6 1.2.21
kmerinshort	1.0.1	1
kraken2	2.14	6	2.14	2.1.52 2.1.3 2.1.23 2.1.12 2.0.8~beta	HEAD
Project	Selected	Spr	Newest	Outdated	Ignored
last	1639	6	16393	1609 1592 1543 1542 14992 1453 1447 1411 1260 1179 1133 1060 963 921 712 393
lastz	1.04.52	6	1.04.52	1.04.41 1.04.222 1.04.15 1.04.033	HEAD
libnode∗	24.2.0	2		23.11.1 22.14.0
libxtend	0.2.1	3	0.2.12	0.2.0.2
libxview∗	3.2p1.4_25.22	2		3.2p1.4
ligr-assembler	2.05	1
lilac	2025.05.18	1			r1172.5017595
lollipops	1.7.2	1	1.7.2
lra	1.3.7.2	1
lua:luajson∗	1.3.4	6	1.3.45	1.3.32 1.3.2 1.3.1 1.3 1.2.2 1.2.1 1.2 1.1.2 1.1 1.0.3 1.0.1 1.0 0.10
lucida-fonts∗	2009.03.09	1
lvb	4.2	1	4.2
macse	2.07	2	2.07	2.03
maddy-mail-server	0.8.1	6	0.8.14	0.7.13 0.7.0 0.6.3	v0.1.1.r0.g8f1d572
mafft∗	7.526	11	7.5264	7.5252 7.5202 7.508 7.505 7.4902 7.4752 7.453 7.407 7.310 7.271 7.267 7.123
mash-genome-distance	2.3	5	2.33	2.2.22 2.12 2.0
mashmap	3.1.3	3	3.1.33
mcl∗	22.282	9	22-282	14-1374 14_1372 14.1372 12-135 1.008.09.149
mcscanx	2024.12.20	1	2024.12.20
mediawiki-extensions-geodata	1_43	1
mediawiki-extensions-mobilefrontend	1_43	1
mediawiki-extensions-templatestyles	1_43	1
mediawiki-skins-minervaneue	1_43	1
mega∗	11.0.13	2	11.0.132
mesquite	3.81_build955	3	3.81_build955	2.99 2.3.0
mhap	2.1.3	3	2.1.33	2.1.1 1.6
migrate-n∗	5.0.6	1
migrate-n-mpi∗	5.0.6	1
migrate-n-mt∗	5.0.6	1
miniasm	0.3	7	0.36	0.2	2018-3-30
minimap2∗	2.30	9	2.304	2.29 2.285 2.27 2.262 2.243 2.172 2.15	2.24.r39.g5e72423
mitogeneextractor	1.9.5	1	1.9.5
mitos	2.1.9	2	2.1.9	0.9.2
mmseqs2	17.b804f	7	17-b804f2 17.b804f	17.b804.f 15-6f4523 14-7e2842 13-45111 13.0 12-113e3 9-d36de	HEAD
modeltest-gui∗	0.1.7	1	0.1.7
modeltest-ng∗	0.1.7	2	0.1.7		20220721
morphoj	1.08.02	1	1.08.02
mothur	1.48.3	6	1.48.3	1.48.2 1.48.1 1.48.03 1.47.0 1.44.32 1.42.1 1.39.5 1.36.1 1.31.2 1.27.0 1.41.21
mpboot	1.2	2	1.2	1.1.0
mpi-bucky	1.4.4	1	1.4.4
mptp	0.2.5	2	0.2.52	0.2.4 0.2.2
mrbayes-mpi	3.2.7	1	3.2.7		3.2.7.r15.a3903b3b
mrbayes-mpi-beagle	3.2.7	1	3.2.7
mrmodeltest∗	2.4	2	2.4	2.1
mummer∗	4.0.1	8	4.0.13	4.0.0rc1 3.234 3.20
muscle-sequence-alignment∗	5.3	12	5.32	5.1.03 3.8.15516 3.8.315
muscle3∗	3.8.1551	2	3.8.1551
mutmap	2.3.9	1	2.3.9
nanoget∗	1.19.3	1	1.19.3
nanomath∗	1.4.0	1	1.4.0

Legend:

• Spread means how many repository families (e.g. all Debian versions as well as Ubuntu and other derivatives make a single family) contain this package.
• newest^#repos - newest known version. The number shows how many repository families have this version.
• devel - newest known devel (or unstable) version. There may be both devel and newest versions for a given package.
• unique - package is only present in a single repository family, there are no other sources to compare it against, so although it's the latest version known to repology, is not really reliable.
• outdated - outdated version which requires updating.
• legacy - outdated version when a newer version is present. This is assumed to be legacy version preserved for e.g. compatibility.
• rolling - package is fetched from always latest snapshot or VCS master/trunk, so it is always latest and is not a subject for comparison.
• noscheme - the project does not have official versioning scheme, so versions used in repositories which are basically random.
• incorrect - version is known to be incorrect (e.g. version not officially released yet, or lacking alpha/beta/rc qualifier).
• untrusted - this source is known to likely supply incorrect versions, so is ignored proactively.
• ignored - version is ignored and excluded from comparison for some other reason (e.g. snapshots).
• vulnerable▲ - version is potentially vulnerable as there are related CVEs.