Information for paml

Versions

• 4.10.7 (3)
• 4.10.6
• 4.10.3
• 4.9j (5)
• 4.9h
• 4.9g
• 4.9e
• 4.8
• 4.7
• 4.4e

Package names

• paml (10)

Repositories

• AUR
• BioArch
• Debian 10
• Debian 11
• Debian 12
• Debian 13
• Debian Unstable
• Deepin
• Devuan 3.0
• Devuan 4.0
• Devuan Unstable
• FreeBSD Ports
• Gentoo
• GNU Guix
• Homebrew tap Brewsci/bio
• Kali Linux Rolling
• LiGurOS stable
• LiGurOS develop
• nixpkgs stable 21.11
• nixpkgs stable 22.05
• nixpkgs stable 22.11
• nixpkgs stable 23.05
• nixpkgs stable 23.11
• nixpkgs unstable
• Pardus 21
• Parrot
• PureOS Amber
• PureOS landing
• Raspbian Oldstable
• Raspbian Stable
• Raspbian Testing
• Rosa 2014.1
• Rosa 2016.1
• Rosa 2021.1
• SlackBuilds
• Spack
• Trisquel 10.0
• Trisquel 11.0
• Ubuntu 14.04
• Ubuntu 16.04
• Ubuntu 18.04
• Ubuntu 20.04
• Ubuntu 22.04
• Ubuntu 23.04
• Ubuntu 23.10

Categories

• Sciences/Biology
• academic
• biology
• misc
• multiverse/science
• sci-biology
• science
• universe/science

Licenses

• Freeware
• GPL-3.0-only
• GPL3
• free-noncomm
• non-commercial

Summaries

• Phylogenetic Analysis by Maximum Likelihood
• Phylogenetic Analysis by Maximum Likelihood (PAML) (2)
• Phylogenetic analyses of DNA or protein sequences using maximum likelihood
• Phylogenetic analysis by maximum likelihood
• Phylogenetic analysis by maximum likelihood. https://doi.org/10.1093/molbev/msm088
• Phylogentic analysis by maximum likelihood

Maintainers

• alexander@mezon.ru
• debian-med-packaging@lists.alioth.debian.org
• fallback-mnt-nix@repology
• jrm@freebsd.org
• malacology@aur
• moeller@debian.org
• pjotr.debian@thebird.nl
• sci-biology@gentoo.org
• slackalaxy@gmail.com
• snehring@spack
• tille@debian.org

• Group email

Homepage links

• http://abacus.gene.ucl.ac.uk/software/^{ok, no IPv6}
• http://abacus.gene.ucl.ac.uk/software/paml.html^{ok, no IPv6} (8)
• https://github.com/abacus-gene/paml/^{ok, no IPv6}

Repository links

• http://abacus.gene.ucl.ac.uk/software/paml4.9j.tgz^{ok, no IPv6}

All package recipes

• https://abf.io/import/paml/blob/rosa2014.1/paml.spec^{dead (see archive.org)}
• https://abf.io/import/paml/blob/rosa2016.1/paml.spec^{dead (see archive.org)}
• https://abf.io/import/paml/blob/rosa2021.1/paml.spec^{ok, no IPv6}
• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=paml^ok
• https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n12938^ok
• https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/paml/PKGBUILD^{ok, no IPv6}
• https://github.com/brewsci/homebrew-bio/blob/master/Formula/paml.rb^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/applications/science/biology/paml/default.nix#L41^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-21.11/pkgs/applications/science/biology/paml/default.nix#L28^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-22.05/pkgs/applications/science/biology/paml/default.nix#L28^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-22.11/pkgs/applications/science/biology/paml/default.nix#L34^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-23.05/pkgs/applications/science/biology/paml/default.nix#L34^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-23.11/pkgs/applications/science/biology/paml/default.nix#L41^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/paml/package.py^{ok, no IPv6}
• https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/paml/paml-4.9j.ebuild^ok
• https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/paml/paml-4.9j.ebuild^ok
• https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/paml/paml-4.9j.ebuild^ok

Downloads

• http://abacus.gene.ucl.ac.uk/software/paml4.9e.tgz^{dead (see archive.org)}
• http://abacus.gene.ucl.ac.uk/software/paml4.9j.tgz^{ok, no IPv6}
• https://github.com/abacus-gene/paml/archive/refs/tags/untagged-a5659203e8ec0ddb58b8.tar.gz^{ok, no IPv6}
• https://github.com/abacus-gene/paml/archive/v4.10.6/paml-4.10.6.tar.gz^{ok, no IPv6}
• https://raw.githubusercontent.com/slackalaxy/sources/main/MCMCtreeDOC.pdf^ok