Information for cufflinks

Versions

• v2.2.1.r83.gb4fa050
• 2.2.2.20190706.162801
• 2.2.1.89
• 2.2.1 (5)
• 2.1.1

Package names

• cufflinks (6)
• cufflinks-bin
• cufflinks-git

Repositories

• AUR
• BioArch
• Debian 10
• Debian 11
• Debian 12
• Debian 13
• Debian Unstable
• Deepin
• Devuan 3.0
• Devuan 4.0
• Devuan Unstable
• FreeBSD Ports
• Kali Linux Rolling
• MacPorts
• Pardus 21
• Parrot
• Raspbian Oldstable
• Raspbian Stable
• Raspbian Testing
• SlackBuilds
• Spack
• Ubuntu 14.04
• Ubuntu 18.04
• Ubuntu 20.04
• Ubuntu 22.04
• Ubuntu 23.04
• Ubuntu 23.10

Categories

• academic
• biology
• multiverse/science
• non-free/science
• science

Licenses

• Artistic
• BSL
• Boost Software License v1
• Boost-1

Summaries

• Cufflinks assembles transcripts, estimates their abundance, etc
• Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
• Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples..
• Transcriptome assembly and differential expression analysis for RNA-Seq.

Maintainers

• alex@biotec.tu-dresden.de
• debian-med-packaging@lists.alioth.debian.org
• fallback-mnt-spack@repology
• greyltc@aur
• malacology@aur
• mestia@debian.org
• plessy@debian.org
• ryandesign@github
• ryandesign@macports
• slackalaxy@gmail.com
• tille@debian.org
• vejnar@aur
• yuri@freebsd.org

• Group email

Homepage links

• http://cole-trapnell-lab.github.io/cufflinks/^ok (2)
• http://cole-trapnell-lab.github.io/projects/cufflinks/^ok
• http://cufflinks.cbcb.umd.edu/^{dead (see archive.org)} (2)
• https://cole-trapnell-lab.github.io/cufflinks^redir
• https://cole-trapnell-lab.github.io/cufflinks/^ok
• https://cufflinks.cbcb.umd.edu/^{dead (see archive.org)}

All package recipes

• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=cufflinks^ok
• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=cufflinks-bin^ok
• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=cufflinks-git^ok
• https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/cufflinks/PKGBUILD^{ok, no IPv6}
• https://github.com/macports/macports-ports/blob/master/science/cufflinks/Portfile^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cufflinks/package.py^{ok, no IPv6}

Downloads

• http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz^ok
• https://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz^ok