Information for cd-hit

Versions

• 4.8.1+git20210420.1.4f6720f
• 4.8.1 (10)
• 4.6.8
• 4.6.6
• 4.6.4
• 4.6.1-2012-08-27

Package names

• cd-hit (7)
• cdhit (5)

Repositories

• AUR
• BioArch
• Debian 10
• Debian 11
• Debian 12
• Debian Unstable
• Debian Janitor - Snapshots
• Deepin
• Devuan 3.0
• Devuan 4.0
• Devuan Unstable
• DPorts
• FreeBSD Ports
• Gentoo
• GNU Guix
• Homebrew tap Brewsci/bio
• Kali Linux Rolling
• LiGurOS stable
• LiGurOS develop
• MacPorts
• nixpkgs stable 21.11
• nixpkgs stable 22.05
• nixpkgs stable 22.11
• nixpkgs stable 23.05
• nixpkgs unstable
• Pardus 21
• Parrot
• pkgsrc current
• PureOS Amber
• PureOS landing
• Raspbian Oldstable
• Raspbian Stable
• Raspbian Testing
• Spack
• Trisquel 10.0
• Trisquel 11.0
• Ubuntu 14.04
• Ubuntu 16.04
• Ubuntu 18.04
• Ubuntu 20.04
• Ubuntu 22.04
• Ubuntu 22.10
• Ubuntu 23.04
• Ubuntu 23.10
• YACP

Categories

• Science
• biology (2)
• sci-biology
• science (2)
• universe/science

Licenses

• GPL-2 (2)
• GPL-2.0
• GPL2

Summaries

• A program for clustering and comparing protein or nucleotide sequences
• Cluster and compare protein or nucleotide sequences (2)
• Clustering Database at High Identity with Tolerance (2)
• Clustering and comparing protein or nucleotide sequences (3)
• clustering DNA/protein sequence database at high identity with tolerance

Maintainers

• bacon@netbsd.org
• bruno@bzizou.net
• debian-med-packaging@lists.alioth.debian.org
• emollier@debian.org
• fallback-mnt-spack@repology
• fbearoff@aur
• jwb@freebsd.org
• reneeotten@github
• reneeotten@macports
• sci-biology@gentoo.org
• tbooth@ceh.ac.uk
• tille@debian.org

• Group email

Homepage links

• http://cd-hit.org/^{ok, no IPv6} (2)
• http://weizhong-lab.ucsd.edu/cd-hit/^{dead (see archive.org)} (4)
• http://weizhongli-lab.org/cd-hit/^{ok, no IPv6} (5)
• https://code.google.com/p/cdhit/^redir
• https://github.com/weizhongli/cdhit^{ok, no IPv6} (2)

All package recipes

• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=cd-hit^ok
• https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n3495^ok
• https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/cdhit/PKGBUILD^{ok, no IPv6}
• https://github.com/brewsci/homebrew-bio/blob/master/Formula/cd-hit.rb^{ok, no IPv6}
• https://github.com/DragonFlyBSD/DPorts/blob/master/biology/cd-hit/Makefile^{ok, no IPv6}
• https://github.com/macports/macports-ports/blob/master/science/cdhit/Portfile^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/applications/science/biology/cd-hit/default.nix#L32^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-21.11/pkgs/applications/science/biology/cd-hit/default.nix#L32^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-22.05/pkgs/applications/science/biology/cd-hit/default.nix#L32^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-22.11/pkgs/applications/science/biology/cd-hit/default.nix#L32^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-23.05/pkgs/applications/science/biology/cd-hit/default.nix#L32^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/cdhit/package.py^{ok, no IPv6}
• https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/cd-hit/cd-hit-4.6.6-r1.ebuild^ok
• https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/cd-hit/cd-hit-4.6.6-r1.ebuild^ok
• https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/cd-hit/cd-hit-4.6.6-r1.ebuild^ok

Downloads

• https://github.com/weizhongli/cdhit/archive/V4.8.1.tar.gz^{ok, no IPv6}
• https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz^{ok, no IPv6}
• https://github.com/weizhongli/cdhit/releases/download/V4.8.1/cd-hit-v4.8.1-2019-0228.tar.gz^{ok, no IPv6}

Build logs

• https://sting.dragonflybsd.org/dports/logs/biology___cd-hit.log^{ok, no IPv6}