Versions
- v2.2.9.r9.g9c90266
- 2.5.1 (9)
- 2.5.0 (2)
- 2.4.5 (2)
- 2.4.4 (5)
- 2.4.2 (2)
- 2.4.1
- 2.3.5.1 (2)
- 2.3.4.3 (2)
- 2.3.4.1
- 2.2.6
- 2.1.0 (2)
Package names
- bowtie (2)
- bowtie2 (11)
- bowtie2-bin
- bowtie2-git
- bowtie2-legacy
Categories
- Productivity/Scientific/Other
- Unspecified
- academic
- biology (2)
- sci-biology
- science (2)
- universe/science
Licenses
- GPL
- GPL-3
- GPL-3+
- GPL-3.0
- GPL-3.0-only
- GPL-3.0-or-later AND Zlib
- GPL3
- GPLv3+ and zlib
Summaries
- An ultra fast and memory-efficient read aligner
- An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences
- Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence.
- Bowtie 2: Fast and sensitive read alignment
- Fast and memory-efficient short read aligner
- Fast and sensitive gapped read aligner
- Fast and sensitive nucleotide sequence read aligner
- Popular short read aligner for Next-generation sequencing data
- Tool for aligning sequencing reads to long reference sequences
- Tool for aligning sequencing reads to long reference sequences. https://doi.org/10.1038/nmeth.1923
- Ultrafast, memory-efficient short read aligner (2)
All package recipes
- https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=bowtie2ok
- https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=bowtie2-binok
- https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=bowtie2-gitok
- https://build.opensuse.org/package/view_file/openSUSE:Factory/bowtie2/bowtie2.spec?expand=1ok
- https://build.opensuse.org/package/view_file/openSUSE:Leap:15.2:Update/bowtie2/bowtie2.spec?expand=1ok
- https://build.opensuse.org/package/view_file/openSUSE:Leap:15.3:Update/bowtie2/bowtie2.spec?expand=1ok
- https://build.opensuse.org/package/view_file/openSUSE:Leap:15.4:Update/bowtie2/bowtie2.spec?expand=1ok
- https://build.opensuse.org/package/view_file/openSUSE:Leap:15.5:Update/bowtie2/bowtie2.spec?expand=1ok
- https://build.opensuse.org/package/view_file/science/bowtie2/bowtie2.spec?expand=1ok
- https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n2979ok
- https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/bowtie2/PKGBUILDok, no IPv6
- https://github.com/DragonFlyBSD/DPorts/blob/master/biology/bowtie2/Makefileok, no IPv6
- https://github.com/Homebrew/homebrew-core/blob/master/Formula/bowtie2.rbok, no IPv6
- https://github.com/macports/macports-ports/blob/master/science/bowtie2/Portfileok, no IPv6
- https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/applications/science/biology/bowtie2/default.nix#L19ok, no IPv6
- https://github.com/NixOS/nixpkgs/blob/release-21.11/pkgs/applications/science/biology/bowtie2/default.nix#L19ok, no IPv6
- https://github.com/NixOS/nixpkgs/blob/release-22.05/pkgs/applications/science/biology/bowtie2/default.nix#L19ok, no IPv6
- https://github.com/NixOS/nixpkgs/blob/release-22.11/pkgs/applications/science/biology/bowtie2/default.nix#L19ok, no IPv6
- https://github.com/NixOS/nixpkgs/blob/release-23.05/pkgs/applications/science/biology/bowtie2/default.nix#L19ok, no IPv6
- https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/bowtie2/package.pyok, no IPv6
- https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/bowtie/bowtie-2.4.4.ebuildok
- https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/bowtie/bowtie-2.5.1.ebuildok
- https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/bowtie/bowtie-2.4.4.ebuildok
- https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/bowtie/bowtie-2.5.1.ebuildok
- https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/bowtie/bowtie-2.4.4.ebuildok
- https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/bowtie/bowtie-2.5.1.ebuildok
- https://src.fedoraproject.org/rpms/bowtie2/blob/epel7/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/epel8/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f30/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f31/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f32/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f33/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f34/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f35/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f36/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f37/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/f38/f/bowtie2.specok, no IPv6
- https://src.fedoraproject.org/rpms/bowtie2/blob/rawhide/f/bowtie2.specok, no IPv6
Build logs
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/1.el7/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/1.el8/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/1.fc30/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/1.fc31/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/1.fc32/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/2.fc33/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/3.fc34/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/4.fc35/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/5.fc36/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.4.1/6.fc37/data/logs/ok, no IPv6
- https://kojipkgs.fedoraproject.org/packages/bowtie2/2.5.1/1.fc39/data/logs/ok, no IPv6
- https://sting.dragonflybsd.org/dports/logs/biology___bowtie2.logok, no IPv6