Information for bowtie

Versions

• 1.3.1+git20210915.2.86c6d77
• 1.3.1 (10)
• 1.3.0 (5)
• 1.2.3 (3)
• 1.2.2
• 1.1.2
• 1.0.1
• 1.0.0
• 0.12.7

Package names

• bowtie (11)
• bowtie1

Repositories

• AUR
• BioArch
• Debian 10
• Debian 11
• Debian 12
• Debian 13
• Debian Unstable
• Debian Janitor - Snapshots
• Deepin
• Devuan 3.0
• Devuan 4.0
• Devuan Unstable
• EPEL 6
• EPEL 7
• EPEL 8
• Fedora 26
• Fedora 27
• Fedora 28
• Fedora 29
• Fedora 30
• Fedora 31
• Fedora 32
• Fedora 33
• Fedora 34
• Fedora 35
• Fedora 36
• Fedora 37
• Fedora 38
• Fedora 39
• Fedora Rawhide
• FreeBSD Ports
• GNU Guix
• Homebrew tap Brewsci/bio
• Kali Linux Rolling
• MacPorts
• nixpkgs stable 21.11
• nixpkgs stable 22.05
• nixpkgs stable 22.11
• nixpkgs stable 23.05
• nixpkgs unstable
• openSUSE Leap 15.2
• openSUSE Leap 15.3
• openSUSE Leap 15.4
• openSUSE Leap 15.5
• openSUSE Tumbleweed
• openSUSE science Tumbleweed
• Pardus 21
• Parrot
• PureOS Amber
• PureOS landing
• Raspbian Oldstable
• Raspbian Stable
• Raspbian Testing
• SlackBuilds
• Spack
• Trisquel 10.0
• Trisquel 11.0
• Ubuntu 14.04
• Ubuntu 16.04
• Ubuntu 18.04
• Ubuntu 20.04
• Ubuntu 22.04
• Ubuntu 23.04
• Ubuntu 23.10
• Wikidata

Categories

• Applications/Engineering
• Productivity/Scientific/Other
• Unspecified
• academic
• biology
• science (2)
• universe/science

Licenses

• Artistic 2.0
• Artistic 2.0 and zlib
• Artistic 2.0 and zlib and GPLv3 and LGPLv3+
• Artistic 2.0 and zlib and LGPLV3+
• Artistic License 2.0
• Artistic-1
• Artistic-1.0
• Artistic-2.0
• Artistic2.0
• LGPL-3+
• PerlArtistic

Summaries

• Alignment tool for short nucleotide sequences against long templates
• An ultrafast memory-efficient short read aligner
• An ultrafast, memory-efficient short read aligner
• Bowtie is an alignment tool for short nucleotide sequences against long templates. https://doi.org/10.1186/gb-2009-10-3-r25
• Fast aligner for short nucleotide sequence reads
• Fast and memory-efficient short read aligner
• Ultrafast memory-efficient short read aligner
• Ultrafast, memory-efficient short read aligner
• an ultrafast, memory-efficient short read aligner
• sequence analysis software

Maintainers

• a821@aur
• alex@biotec.tu-dresden.de
• debian-med-packaging@lists.alioth.debian.org
• fallback-mnt-spack@repology
• jwb@freebsd.org
• marcuscalhoun-lopez@github
• mcalhoun@macports
• mestia@debian.org
• moeller@debian.org
• ogi@debian.org
• pavol@rusnak.io
• slackalaxy@gmail.com
• stephan.struckmann@gmail.com
• tille@debian.org
• yask.gupta87@gmail.com

• Group email

Homepage links

• http://bio-bowtie.sourceforge.net/^{dead (see archive.org)}
• http://bowtie-bio.sf.net/^{redir, no IPv6}
• http://bowtie-bio.sourceforge.net/^redir (3)
• http://bowtie-bio.sourceforge.net/index.shtml^redir (4)
• https://bowtie-bio.sourceforge.io/^{redir, no IPv6}
• https://bowtie-bio.sourceforge.net/^ok (2)
• https://bowtie-bio.sourceforge.net/index.shtml^ok (2)
• https://sourceforge.net/projects/bowtie-bio/^ok

Repository links

• https://github.com/BenLangmead/bowtie^{ok, no IPv6}
• https://github.com/BenLangmead/bowtie/archive/v1.3.0.tar.gz^{ok, no IPv6}

All package recipes

• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=bowtie^ok
• https://build.opensuse.org/package/view_file/openSUSE:Factory/bowtie/bowtie.spec?expand=1^ok
• https://build.opensuse.org/package/view_file/openSUSE:Leap:15.2:Update/bowtie/bowtie.spec?expand=1^ok
• https://build.opensuse.org/package/view_file/openSUSE:Leap:15.3:Update/bowtie/bowtie.spec?expand=1^ok
• https://build.opensuse.org/package/view_file/openSUSE:Leap:15.4:Update/bowtie/bowtie.spec?expand=1^ok
• https://build.opensuse.org/package/view_file/openSUSE:Leap:15.5:Update/bowtie/bowtie.spec?expand=1^ok
• https://build.opensuse.org/package/view_file/science/bowtie/bowtie.spec?expand=1^ok
• https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n3330^ok
• https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/bowtie/PKGBUILD^{ok, no IPv6}
• https://github.com/brewsci/homebrew-bio/blob/master/Formula/bowtie.rb^{ok, no IPv6}
• https://github.com/macports/macports-ports/blob/master/science/bowtie/Portfile^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/nixos-unstable/pkgs/applications/science/biology/bowtie/default.nix#L39^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-21.11/pkgs/applications/science/biology/bowtie/default.nix#L19^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-22.05/pkgs/applications/science/biology/bowtie/default.nix#L39^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-22.11/pkgs/applications/science/biology/bowtie/default.nix#L39^{ok, no IPv6}
• https://github.com/NixOS/nixpkgs/blob/release-23.05/pkgs/applications/science/biology/bowtie/default.nix#L39^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/bowtie/package.py^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/el6/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/epel7/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/epel8/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f26/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f27/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f28/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f29/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f30/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f31/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f32/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f33/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f34/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f35/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f36/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f37/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f38/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/f39/f/bowtie.spec^{ok, no IPv6}
• https://src.fedoraproject.org/rpms/bowtie/blob/rawhide/f/bowtie.spec^{ok, no IPv6}

Downloads

• http://downloads.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://freefr.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://internode.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://jaist.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://liquidtelecom.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://nchc.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://netcologne.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://netix.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://pilotfiber.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{dead (see archive.org)}
• http://tenet.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• http://ufpr.dl.sourceforge.net/project/bowtie-bio/bowtie/1.3.0/bowtie-1.3.0-src.zip^{ok, no IPv6}
• https://github.com/BenLangmead/bowtie/archive/v1.3.1.tar.gz^{ok, no IPv6}
• https://github.com/BenLangmead/bowtie/archive/v1.3.1/bowtie-1.3.1.tar.gz^{ok, no IPv6}

Patches

• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/bowtie/fix_narrowing_err.patch^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/bowtie/for_aarch64.patch^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/bowtie/issue-87.patch^{ok, no IPv6}

Build logs

• https://kojipkgs.fedoraproject.org/packages/bowtie/0.12.7/2.el6/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.0.1/10.fc28/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.0.1/11.fc29/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.0.1/12.fc30/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.0.1/13.fc31/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.0.1/7.fc26/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.0.1/9.fc27/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.2.3/1.fc30/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.2.3/1.fc31/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.2.3/1.fc32/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.2.3/2.el7/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.2.3/2.el8/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.3.0/1.fc33/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.3.0/2.fc34/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.3.0/3.fc35/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.3.1/1.fc38/data/logs/^{ok, no IPv6}
• https://kojipkgs.fedoraproject.org/packages/bowtie/1.3.1/2.fc39/data/logs/^{ok, no IPv6}