Information for bedtools

Versions

• v2.27.1.r0.g1de417b9
• 2.30.0 (9)
• 2.29.2 (5)
• 2.27.1 (3)
• 2.26.0 (3)
• 2.25.0
• 2.21.0
• 2.18.0
• 2.17.0
• 2.15.0
• 2.14.3

Package names

• BEDTools
• academic/bedtools
• bedtools (9)
• bedtools-git
• biology/bedtools (2)
• sci-biology/bedtools

Repositories

• AOSC
• AUR
• Debian Oldstable
• Debian Stable
• Debian Testing
• Debian Unstable
• Deepin
• Devuan 1.0 (Jessie)
• Devuan 2.0 (ASCII)
• Devuan 3.0 (Beowulf)
• Devuan 4.0 (Chimaera)
• Devuan Unstable
• DPorts
• EPEL 6
• EPEL 7
• Fedora 26
• Fedora 27
• Fedora 28
• Fedora 29
• Fedora 30
• FreeBSD Ports
• Funtoo 1.4
• Gentoo
• GNU Guix
• Homebrew
• Kali Linux Rolling
• LiGurOS stable
• LiGurOS develop
• Linuxbrew
• MacPorts
• nixpkgs stable
• nixpkgs unstable
• openSUSE Science Tumbleweed
• Pardus 17
• Pardus 19
• Parrot
• pkgsrc current
• PureOS Amber
• PureOS landing
• Raspbian Oldstable
• Raspbian Stable
• Raspbian Testing
• SlackBuilds
• Trisquel 6.0
• Trisquel 7.0
• Trisquel 8.0
• Trisquel 9.0
• Ubuntu 14.04
• Ubuntu 16.04
• Ubuntu 18.04
• Ubuntu 20.04
• Ubuntu 20.10
• Ubuntu 21.04
• YACP

Categories

• Applications/Engineering
• Productivity/Scientific/Other
• Science
• academic
• biology (2)
• misc
• sci-biology
• science (3)
• universe/science

Licenses

• GPL-2
• GPL-2.0
• GPL-2.0-only
• GPL2
• GPLv2+
• MIT

Summaries

• A flexible suite of utilities for comparing genomic features
• A powerful tool for genome arithmetic
• A powerful toolset for genome arithmetic (2)
• Powerful toolset for genome arithmetic
• Swiss army knife for genome arithmetic
• Tools for genome analysis and arithmetic
• Tools for genome arithmetic (set theory on the genome)
• Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
• Toolset for genome set arithmetic such as intersect, union
• Utilities to perform basic operations on BED files
• powerful toolset for genome arithmetic
• powerful toolset for genome arithmetic.

Maintainers

• arjanvandervelde@github
• bacon@netbsd.org
• balwierz@aur
• cu@cua0.org
• debian-med-packaging@lists.alioth.debian.org
• fallback-mnt-aosc@repology
• fallback-mnt-aur@repology
• jwb@freebsd.org
• mmokrejs@gmail.com
• plessy@debian.org
• proxy-maint@gentoo.org
• sci-biology@gentoo.org
• slackalaxy@gmail.com
• tille@debian.org

• Group email

Homepage links

• http://bedtools.readthedocs.org/⁴⁶ (2)
• http://code.google.com/p/bedtools/⁴⁶ (2)
• https://bedtools.readthedocs.io/⁴⁶
• https://bedtools.readthedocs.io/en/latest/⁴⁶ (2)
• https://code.google.com/p/bedtools/⁴⁶
• https://github.com/arq5x/bedtools⁴⁶
• https://github.com/arq5x/bedtools2⁴⁶ (8)
• https://github.com/arq5x/bedtools2/⁴⁶

All package recipes

• http://cvsweb.netbsd.org/bsdweb.cgi/~checkout~/pkgsrc/biology/bedtools/Makefile?content-type=text/plain⁴⁶
• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=bedtools⁴⁶
• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=bedtools-git⁴⁶
• https://build.opensuse.org/package/view_file/science/bedtools/bedtools.spec?expand=1⁴⁶
• https://cgit.freebsd.org/ports/plain/biology/bedtools/Makefile⁴⁶
• https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n490⁴⁶
• https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n528⁴⁶
• https://github.com/DragonFlyBSD/DPorts/blob/master/biology/bedtools/Makefile⁴⁶
• https://github.com/funtoo/science-kit/blob/1.4-release/sci-biology/bedtools/bedtools-2.26.0.ebuild⁴⁶
• https://github.com/Homebrew/homebrew-core/blob/master/Formula/bedtools.rb⁴⁶
• https://github.com/Homebrew/linuxbrew-core/blob/master/Formula/bedtools.rb⁴⁶
• https://github.com/macports/macports-ports/blob/master/science/bedtools/Portfile⁴⁶
• https://github.com/NixOS/nixpkgs/blob/master/pkgs/applications/science/biology/bedtools/default.nix#L28⁴⁶
• https://github.com/NixOS/nixpkgs/blob/release-21.05/pkgs/applications/science/biology/bedtools/default.nix#L28⁴⁶
• https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/bedtools/bedtools-2.29.2.ebuild⁴⁶
• https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/bedtools/bedtools-2.30.0.ebuild⁴⁶
• https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/bedtools/bedtools-2.29.2.ebuild⁴⁶
• https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/bedtools/bedtools-2.30.0.ebuild⁴⁶
• https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/bedtools/bedtools-2.29.2.ebuild⁴⁶
• https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/bedtools/bedtools-2.30.0.ebuild⁴⁶
• https://slackbuilds.org/slackbuilds/14.2/academic/bedtools/bedtools.SlackBuild⁴⁶
• https://src.fedoraproject.org/rpms/BEDTools/blob/epel7/f/BEDTools.spec⁴⁶
• https://src.fedoraproject.org/rpms/BEDTools/blob/f26/f/BEDTools.spec⁴⁶
• https://src.fedoraproject.org/rpms/BEDTools/blob/f27/f/BEDTools.spec⁴⁶
• https://src.fedoraproject.org/rpms/BEDTools/blob/f28/f/BEDTools.spec⁴⁶
• https://src.fedoraproject.org/rpms/BEDTools/blob/f29/f/BEDTools.spec⁴⁶
• https://src.fedoraproject.org/rpms/BEDTools/blob/f30/f/BEDTools.spec⁴⁶

Downloads

• https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2⁴⁶
• https://github.com/arq5x/bedtools2/releases/download/v2.18.0/bedtools-2.18.0.tar.gz⁴⁶
• https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz⁴⁶
• https://github.com/arq5x/bedtools2/releases/download/v2.29.2/bedtools-2.29.2.tar.gz⁴⁶
• https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz⁴⁶ (3)

Build logs

• https://sting.dragonflybsd.org/dports/logs/biology___bedtools.log⁴⁶