Information for abyss

Versions

• HEAD
• 2.3.7 (5)
• 2.3.5 (2)
• 2.3.4
• 2.3.1
• 2.2.5
• 2.2.4
• 2.1.5
• 2.0.2
• 1.9.0
• 1.3.6
• 0.3

Package names

• abyss (8)

Repositories

• AUR
• BioArch
• Debian 10
• Debian 11
• Debian 12
• Debian 13
• Debian Unstable
• Deepin
• Devuan 3.0
• Devuan 4.0
• Devuan Unstable
• FreeBSD Ports
• Gentoo
• Homebrew
• Kali Linux Rolling
• LiGurOS stable
• LiGurOS develop
• MacPorts
• Pardus 21
• Parrot
• PureOS Amber
• PureOS landing
• Raspbian Oldstable
• Raspbian Stable
• Raspbian Testing
• Spack
• Ubuntu 14.04
• Ubuntu 16.04
• Ubuntu 18.04
• Ubuntu 20.04
• Ubuntu 22.04
• Ubuntu 23.04
• Ubuntu 23.10
• YACP

Categories

• Science
• biology
• misc
• multiverse/science
• sci-biology
• science
• universe/science
• www

Licenses

• BSD
• GPL-3
• GPL3

Summaries

• Assemble large genomes using short reads
• Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler (2)
• Assembly By Short Sequences: parallel, paired-end sequence assembler
• Genome sequence assembler for short reads
• Light HTTP/1.1 compliant web server.

Maintainers

• crusoe@debian.org
• debian-med-packaging@lists.alioth.debian.org
• emollier@debian.org
• fallback-mnt-spack@repology
• malacology@aur
• michael.crusoe@gmail.com
• nomaintainer@macports.org
• sci-biology@gentoo.org
• sjackman@debian.org
• tille@debian.org
• ubuntu-devel-discuss@lists.ubuntu.com
• yuri@freebsd.org

• Group email

Homepage links

• http://abyss.sourceforge.net/^redir
• http://www.bcgsc.ca/platform/bioinfo/software/abyss^{dead (see archive.org)}
• https://github.com/bcgsc/abyss^{ok, no IPv6} (4)
• https://www.bcgsc.ca/platform/bioinfo/software/abyss^{dead (see archive.org)}
• https://www.bcgsc.ca/resources/software/abyss^{dead (see archive.org)} (2)
• https://www.bcgsc.ca/resources/software/abyss/^{dead (see archive.org)}

Repository links

• https://github.com/bcgsc/abyss.git^{redir, no IPv6}

All package recipes

• https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=abyss^ok
• https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/abyss/PKGBUILD^{ok, no IPv6}
• https://github.com/Homebrew/homebrew-core/blob/master/Formula/abyss.rb^{dead (see archive.org)}
• https://github.com/macports/macports-ports/blob/master/www/abyss/Portfile^{ok, no IPv6}
• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/abyss/package.py^{ok, no IPv6}
• https://gitlab.com/liguros/liguros-repo/-/blob/develop/sci-biology/abyss/abyss-2.3.4.ebuild^ok
• https://gitlab.com/liguros/liguros-repo/-/blob/stable/sci-biology/abyss/abyss-2.3.4.ebuild^ok
• https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-biology/abyss/abyss-2.3.4.ebuild^ok

Downloads

• https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz^{ok, no IPv6}
• https://github.com/bcgsc/abyss/releases/download/2.3.5/abyss-2.3.5.tar.gz^{ok, no IPv6}
• https://github.com/bcgsc/abyss/releases/download/2.3.7/abyss-2.3.7.tar.gz^{ok, no IPv6}

Patches

• https://github.com/spack/spack/blob/develop/var/spack/repos/builtin/packages/abyss/fix_BloomFilter.hpp.patch^{ok, no IPv6}