Metapackages

200 item(s) on this page

Metapackage In Homebrew tap Brewsci/bio Spread Newest Outdated Ignored
abacas 1.3.1 2 1.3.1
abricate 0.8.10 1
adam 0.25.0 1
ale-assemby-likelihood-estimator 0.0.20180904 1
andi 0.12 3 0.122 0.11 0.10 0.9.6.1
aragorn 1.2.38 3 1.2.382 1.2.36
arcs 1.0.5 1
art 20160605 3 2.0 0.9.01
artemis 17.0.1 7 17.0.12 16.0.17 16.0.0 1.4.03 17.0.1.11
ascp 3.7.7 1
astral-species-tree 5.5.6 1
bali-phy 3.4.1 3 3.4.1 3.4 3.3 3.1.2 3.0.3
bamm-bayesian 2.5.0 1
bandage 0.8.1 2 0.8.1
barrnap 0.9 2 0.9 0.8 0.7
bazam 1.0.1 1
bcalm 2.2.0 1
beast2 2.5.0 3 2.5.1 2.4.7 2.4.4
berokka 0.2 1
bfc r181 1
biobloomtools 2.3.1 1
biomake 0.1.5 1
bioperl 1.007002 5 1.007002 1.7.4 1.7.2 1.7.1 1.6.9242 1.6.923 1.6.901 1.6.9 9999
blast-legacy 2.2.26 1
blat 36 3 35 34
bonsai 0.3 2 1.3.9
bowtie 1.2.2_p1 8 1.2.2_p1 1.2.22 1.2.0 1.1.23 1.1.1 1.0.1 1.0.02 0.12.72 v2.2.9.r9.g9c90266
breseq 0.33.0 1
busco 3.0.2 2 3.0.0
cannoli 0.3.0 1
canu 1.8 4 1.83 1.7.1 1.7 1.6
cap3 2015-02-11 2 20091029
cd-hit 4.6.8 8 4.6.82 4.6.63 4.6.52 4.6.42 4.6.1 4.5.7
centrifuge 1.0.3 3 1.0.4 1.0.3 1.0.3beta
circlator 1.5.5 2 1.5.5 1.5.1 1.4.1 1.4.0
circos 0.69-6 5 0.69.6 0.69.5 0.69_4 0.69.4 0.69 0.66 0.64 0.552 0.49
clonalframeml 1.11 2 1.11
clustal-omega 1.2.4 8 1.2.47 1.2.1
clustalw 2.1 10 2.19 1.83
consel 0.20 1
crumble 0.8.1 1
cutadapt 1.16 3 1.18 1.14
dida 1.0.1 1
disty 0.1.0 1
dsh-bio 1.1 1
dwgsim 0.1.12 3 0.1.122 0.1.11 r159.39a1bbb
e-mem 1.0.1 2 1.0.1 1.0.0
easel 0.43 1
edirect 9.70 2 10.2
elph 1.0.1 5 1.0.14
Metapackage In Homebrew tap Brewsci/bio Spread Newest Outdated Ignored
ema 0.6.2 1
emboss 6.6.0 12 6.6.08 6.5.7 6.4.0 6.3.1 6.0.1
exabayes 1.5 2 1.4.1
exonerate 2.2.0 9 2.4.06 2.2.03
express-rna-seq 1.5.2 3 1.5.12
fasta 36.3.8g 5 36.3.8g2 36.3.8 36.3.5e 21.1.1
fastani 1.1 1
fastp 0.19.5 3 0.19.6 0.14.1
fasttree 2.1.10 6 2.1.104 2.1.9 2.1.82 2.1.7 2.1.4
fastuniq 1.1 1
fermi-lite 0.1 2 0.1
figtree 1.4.3 5 1.4.43 1.4.3 1.4.22 1.4 1.3.1
filtlong 0.2.0 2 0.2.0
finch-rs 0.1.8 2 0.1.9
flash-seq 1.2.11 1
flowcraft 1.4.0 1
flye 2.3.7 1
fraggenescan 1.31 2 1.30
freebayes 1.2.0 5 1.2.03 1.1.0 1.0.2 1.0.1.r0.gefe685d 2017-08-23
fwdpp 0.6.1 1
gatk 4.0.11.0 4 4.0.11.0 4.0.7.0 4.0.6.0 2.4 9999
gblocks 0.91b 2 0.91b
gemma 0.98 3 0.98.1 0.98 0.97
genome-painter 0.0.6 1
gepard 1.40 1
gfakluge 1.1.0 1
gfalint 1.0.0 1
gfaview 0.0.53 1
gmap-gsnap 2018-07-04 2 2018.07.04
gzstream 1.5 5 1.54
harvest-tools 1.3 2 1.3 1.2
hisat2 2.1.0 7 2.1.03 2.0.52 2.1.0.232
hmmer 2.4i 13 3.2.17 3.1b24 3.1beta2 3.1_beta2 3.1b1 3.03 3 2.4i 2.3.22
humann2 0.11.1 1
idba 1.1.3 3 1.1.32 1.1.2
indel-seq-gen 2.1.03 1
indelible 1.03 2 1.03
infernal 1.1.2 6 1.1.24 1.1.1 1.1rc4 1.0.22
iqtree 1.6.8 4 1.6.93 1.6.5 1.6.1 1.5.5 1.5.3 1.3.11.1
ispcr 33 1
iva 1.0.8 3 1.0.9 1.0.8 0.10.1
jellyfish-k-mer 2.2.10 6 2.2.103 2.2.8 2.2.62 2.2.42 2.1.4 1.1.12 1.1.11 1.1.10 1.1.2
jspecies 1.2.1 1
k8 0.2.4 1
kaiju 1.6.3 2 1.6.3
kat 2.4.1 1
kent-tools 367 1
kma 0.14.3 1
kmc 3.1.0 3 2.3 2.0
kmergenie 1.7048 1
Metapackage In Homebrew tap Brewsci/bio Spread Newest Outdated Ignored
kr-mutation-distances 2.0.2 1
kraken 1.1 5 1.13 0.10.5beta 0.1 r70.2c5f7ce 32.368a837
kraken2 2.0.7 1
last 926 4 9632 938 921 869 830 712 490 393 299 230 189
lastz 1.04.00 2 1.04.00
legsta 0.3.2 1
libmuscle 3.7 3 3.72
libpll 0.3.2 3 1.0.11 0.3.2 0.3.1
libsequence 1.9.3 1
light-assembler 1.0.0 1
lighter 1.1.1 1
links-scaffolder 1.8.6 1
lofreq 2.1.3.1 1
lrsim 1.0 1
magic-blast 1.3.0 1
maker 2.31.10 1
mash-genome-distance 2.1 3 2.12 2.0 1.1.1
maxbin2 2.2.5 1
mcl 14-137 8 14.1372 14_137 14-137 14 12.135 12 11 09_308 08.312 1.008.09.149
megahit 1.1.3 1
meme 4.11.2.2 5 5.0.4 4.12.0 4.11.2_p2 2017-09-10
metaphlan 1.7.8 1
mhap 2.1.3 2 2.1.3 2.1.1 1.6
minced 0.3.0 2 0.3.2
minia 3.2.0 2 3.2.0 1.6906 1.6088 1.6067
miniasm 0.3 2 0.3 0.2
minimap 0.2 2 0.2
minimap2 2.15 4 2.152 2.102
mir-prefer 0.24 1
mlst 2.16.1 1
mmtf-cpp 1.0.0 3 1.0.02
mosdepth 0.2.3 3 0.2.32
mothur 1.40.3 4 1.41.21 1.41.3 1.40.5 1.40.3 1.39.5 1.38.1.1 1.36.1 1.33.3 1.31.2 1.27.0 1.22.2
mp-est 2.0 1
mpboot 1.1.0 1
mrbayes 3.2.6 7 3.2.63 3.2.3 3.2.2 3.1.24
mummer 3.23 6 3.233 3.22 3.20 4.0.0.b2.2
muscle-sequence-alignment 3.8.1551 8 3.8.15513 3.8.315
nanopolish 0.10.2 3 0.11.0 0.10.22 0.9.0 0.5.0 0.4.0
newick-utils 1.6 4 1.62 1.5.0
nextflow 0.32.0 2 0.32.0
nextgenmap 0.5.5 1
ngmaster 0.5.5 1
nonpareil-metagenomic-coverage 3.3.1 1
ntcard 1.1.0 1
nxrepair 0.13 1
nxtrim 0.4.3 1
oases 0.2.08 1
oma 2.3.0 1
orfm 0.7.1 2 0.7.1
Metapackage In Homebrew tap Brewsci/bio Spread Newest Outdated Ignored
paml 4.9h 8 4.9h4 4.9g 4.9e2 4.8 4.7 4.5 4.4e 4.4c
panito 0.0.1 1
parasail 2.2.0 1
parsnp 1.2 2 1.2
pathvisio 3.3.0 2 3.2.4
phlawd 3.4b 1
phylip 3.697 8 3.6973 3.6963 3.695 3.694
phyml 3.3.20180621 6 3.3.201806213 3.3.20180214 3.3.201705302 3.2.0 2.4.5 r121.ab59039 20120412 20110919
phyx 0.999 2 0.999
pilon 1.22 2 1.23 1.22
porechop 0.2.3 3 0.2.4 0.2.3
portcullis 1.1.0 1
prank 170427 4 150803 140603 0.0.170427 0.0.150803 0.0.140110
prokka 1.13 2 1.13.4
pymol 2.3.0 15 2.3.03 2.2.05 2.1.1 2.1.03 1.9.0.0.svn4184 1.8.6.04 1.8.6 1.8.4.02 1.7.7.1.svn4131 1.7.4.0 1.7.2.1 1.7.0.0 1.4.12
python:matplotlib 2.2.3 32 3.0.211 3.0.1 3.0.0 2.2.315 2.2.26 2.2.1 2.2.0 2.1.23 2.1.12 2.1.0 2.0.22 2.0.1 2.0.04 1.5.34 1.5.2 1.5.15 1.5.02 1.4.32 1.4.22 1.4.1 1.4.0 1.3.13 1.3.0 1.2.1 1.2.04 1.1.1rc1.git20120423 1.0.0 0.99.1.23 9999 r26679.b9b02f189
quast 5.0.2 1
quickmerge 0.2 1
quicktree 2.4 1
quip 1.1.8 1
r8s 1.80 2 1.80
racon 1.3.1 2 1.3.2 1.3.1
rapidnj 2.3.2 1
raxml 8.2.12 7 8.2.124 8.2.11 8.2.10 8.2.9 8.2.4 8.1.1 7.7.6 7.2.8 7.2.6
raxml-ng 0.7.0 1
rcorrector 1.0.3 1
readseq 2.1.30 4 19930201 2.1.30 1
realphy 1.12 1
repaq 0.2.0 1
repeatmasker 4.0.7 4 4.0.8 4.0.5 4.0.1
rmblast 2.2.28 3 2.2.28 1.2
rtg-tools 3.9 2 3.8.4
salmid 0.122 2 0.1.23
salmon 0.9.1 4 0.12.02 0.9.1 0.7.2
sambamba 0.6.8 4 0.6.82 0.6.7
samblaster 0.1.24 2 0.1.24
samclip 0.2 1
sdsl-lite 2.1.1 4 2.1.12 2.0.3 v2.1.1.r132.gddb0fbbc
seq-gen 1.3.4 2 1.3.4 1.3.3 1.3.2
seqan 2.4.0 9 2.4.07 2.3.2 2.3.12 2.2.0 1.4.25 1.4.1 1.3.12 1.3 9999 r628.35e4fba r.fcad60a
seqkit 0.10.0 2 0.9.0
sga 0.10.15 3 0.10.152 0.10.14
shovill 1.0.4 1
simulate-pcr 1.2 1
ska-split-kmer 1.0 1
skesa 2.3.0 1
smalt 0.7.6 2 0.7.6
snap-gene-prediction 2013-11-29 1
snippy 4.3.2 1
snoscan 0.9.1 1

Legend: